View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_61 (Length: 239)
Name: NF11746_low_61
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10772303 - 10772080
Alignment:
| Q |
1 |
tccttgataagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10772303 |
tccttgataagatgagcatcaatatcttttgtgacctttgcagcaaattccaaaaatgaatcaggagatggacctgtaatatcctcctttagtttctcat |
10772204 |
T |
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| Q |
101 |
actcaaaagtccatttcacaaac---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaa |
197 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10772203 |
actcaaatgtccatttcacaatcccaccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaa |
10772104 |
T |
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| Q |
198 |
gacgctatatgtaattaccttatt |
221 |
Q |
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|| ||||||||||||||||||||| |
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| T |
10772103 |
gaagctatatgtaattaccttatt |
10772080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10777590 - 10777367
Alignment:
| Q |
1 |
tccttgataagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcat |
100 |
Q |
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||||||| |||||||| ||||||||| ||| ||| |||| ||||||| |||||| ||||||||||||||| ||||| ||| ||||||||||| ||||||| |
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| T |
10777590 |
tccttgacaagatgagaatcaatatcttttatgagctttacagcaaagtccaagtatgaatcaggagatgaacctgcaatttcctcctttagcttctcat |
10777491 |
T |
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| Q |
101 |
actcaaaagtccatttcacaa---acccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaa |
197 |
Q |
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| ||| ||||||||||||||| ||||||||||| |||| ||||||||||||| || ||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
10777490 |
attcataagtccatttcacaattccaccaccatgttctttatgaatcacttgtaatattgcctttaaactcttgtaattctcactcacgtccccatcaaa |
10777391 |
T |
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| Q |
198 |
gacgctatatgtaattaccttatt |
221 |
Q |
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|| ||||||| | |||| |||||| |
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| T |
10777390 |
gaagctatatatgattatcttatt |
10777367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 10784365 - 10784150
Alignment:
| Q |
9 |
aagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaa |
108 |
Q |
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|||||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||| ||||| |||||||| || | |
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| T |
10784365 |
aagatgagaatcaatatcttttgtgacctttacagcaaggtccaagtatgaatcaggagatccacctgtaatttcctcttttagcttctcatattcgtat |
10784266 |
T |
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| Q |
109 |
gtccatttcacaaac---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctat |
205 |
Q |
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| |||||| |||| | ||||||||||| |||| |||||||||||| || ||||||||||||||||| | |||| |||||| |||||||| | ||||| |
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| T |
10784265 |
gcccatttaacaatcccaccaccatgttctttatggatcacttgtaatattgcctttaaactcttgtaattttcactcacttctccatcaaaaatgctat |
10784166 |
T |
|
| Q |
206 |
atgtaattaccttatt |
221 |
Q |
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|| | |||| |||||| |
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| T |
10784165 |
atatgattatcttatt |
10784150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 10791061 - 10790956
Alignment:
| Q |
9 |
aagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaa |
108 |
Q |
| |
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||||||| ||||||||| |||||||||| |||| ||| |||||| || |||||||| ||| |||| ||||||||||||||| |||||||||||||||| |
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| T |
10791061 |
aagatgataatcaatatcttttgtgacctctgcaacaaggtccaagtataaatcaggacatgcacctataatatcctcctttactttctcatactcaaaa |
10790962 |
T |
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| Q |
109 |
gtccat |
114 |
Q |
| |
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|||||| |
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| T |
10790961 |
gtccat |
10790956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 10790917 - 10790834
Alignment:
| Q |
138 |
atcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctatatgtaattaccttatt |
221 |
Q |
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||||| |||||| |||||| |||| ||||||||||||||||||| ||| | |||||||||| |||| |||| ||||||||||| |
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| T |
10790917 |
atcaaacacttgcaatgttcccttgaaactcttgtaactctcactcacatttccatcaaagaggctaaatgtgattaccttatt |
10790834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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