View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_65 (Length: 223)
Name: NF11746_low_65
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 24354753 - 24354941
Alignment:
| Q |
1 |
gtgttcaaatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgaga |
100 |
Q |
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| T |
24354753 |
gtgttcaaatataaaggagattcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgaga |
24354852 |
T |
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| Q |
101 |
aaaatgatattgatcatagtgatgatgagtctgttgagattttggaagaatggcttaatcggaagaatgctagacaaagatcacctttc |
189 |
Q |
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| T |
24354853 |
aaaatgatattgatcatagtgatgatgagtctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttc |
24354941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 24364872 - 24364689
Alignment:
| Q |
8 |
aatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatga |
107 |
Q |
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| T |
24364872 |
aatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgacaa |
24364773 |
T |
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| Q |
108 |
tattgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcggaagaatgctagacaaagatcaccttt |
188 |
Q |
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| T |
24364772 |
tgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcaccttt |
24364689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 24369775 - 24369958
Alignment:
| Q |
8 |
aatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatga |
107 |
Q |
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| T |
24369775 |
aatataaaggaactttcaagtttgatgtagtaatacttggcaagaatgcattagaaatagactatgatacttcatgtgacagtgatgatgaaaatgacaa |
24369874 |
T |
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| Q |
108 |
tattgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcggaagaatgctagacaaagatcaccttt |
188 |
Q |
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| T |
24369875 |
tgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcaccttt |
24369958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 24358422 - 24358603
Alignment:
| Q |
8 |
aatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatga |
107 |
Q |
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| T |
24358422 |
aatataaaagaacttccaagtttgatgtacacatttttggccggaatgcagtagaaatagattatt---cttcatgtgacagtgatgatgaaaatgacaa |
24358518 |
T |
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| Q |
108 |
tattgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcggaagaatgctagacaaagatcacctttc |
189 |
Q |
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| T |
24358519 |
tgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaagaaggctaaacaaagatcacctttc |
24358603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 24313919 - 24313985
Alignment:
| Q |
2 |
tgttcaaatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaataga |
68 |
Q |
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| T |
24313919 |
tgttcaaatataaaggaacttcaaagtttgatgtactcatacttgaccagaatgcactagaaataga |
24313985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 24344488 - 24344634
Alignment:
| Q |
8 |
aatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatga |
107 |
Q |
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||||||||||| |||| || ||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||| | ||||||| || | | |
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| T |
24344488 |
aatataaaggaacttcgaaatttgatgtagtaatacttggtcggaatgcagtagaaatagactatgatacttcatgtgacactgatgatgaaaatgacaa |
24344587 |
T |
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| Q |
108 |
tattgatcatagtgatgatgagtctgttgagattttggaagaatggc |
154 |
Q |
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| T |
24344588 |
tgttggtcatagtgatgatgaatcagttgagattttagatgaatggc |
24344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24351668 - 24351753
Alignment:
| Q |
1 |
gtgttcaaatataaaggagcttcaaagtttgatgtacacatacttggccagaatgcagtagaaatagactatgatccttcatgtga |
86 |
Q |
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||||| |||||||||||| |||| ||||||||||||| |||||||| | ||||| || ||||||||||||||| |||||||||| |
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| T |
24351668 |
gtgtttaaatataaaggaacttccaagtttgatgtactaatacttggtaataatgcggttgaaatagactatgattcttcatgtga |
24351753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 24362141 - 24362183
Alignment:
| Q |
33 |
tgtacacatacttggccagaatgcagtagaaatagactatgat |
75 |
Q |
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| T |
24362141 |
tgtacacatacttggcaagaatgcagtagaaatagactatgat |
24362183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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