View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_8 (Length: 683)
Name: NF11746_low_8
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 435 - 675
Target Start/End: Complemental strand, 44783369 - 44783131
Alignment:
| Q |
435 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
534 |
Q |
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| T |
44783369 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
44783270 |
T |
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| Q |
535 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaacctatgttgaactgacaattgatgtttactttgttttt |
634 |
Q |
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| T |
44783269 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaa-ctatgttgaactgacaattgatgtttactttgttttt |
44783171 |
T |
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| Q |
635 |
gggannnnnnnnncctttgtttgacatttcctccctatgct |
675 |
Q |
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| T |
44783170 |
ggga-ttttttttcctttgtttgacatttcctccctatgct |
44783131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 184 - 426
Target Start/End: Complemental strand, 44783943 - 44783685
Alignment:
| Q |
184 |
tgtacaccattactaaaatggtatccttctcaagaaagacgaaaccaccgaaggtatgttcaaaattaaaaatcnnnnnnnngatttgtgcggttttaat |
283 |
Q |
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| T |
44783943 |
tgtacaccattattaaaatggtattcttttcaaaaaagacgaaaccacta---gtatgttcaaaattaaaaatctttttttttatttgtgcggttttaat |
44783847 |
T |
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| Q |
284 |
atttgacatgtcgact-----------------gcgcataacattttccccatattttcaatgagttttattaagagtacaaattgttcatgaaacaact |
366 |
Q |
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| T |
44783846 |
atttaacatgtcgacttttttacgatgatagatgcacataacattttccccatattttcaacgagttttattaagagtacaaattattcatgaaacaact |
44783747 |
T |
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| Q |
367 |
acatcttgt--tcatgaaatgaatcgtaaaactgaaaagaaagcaattaaaaaatttaccaa |
426 |
Q |
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| T |
44783746 |
acatcttattatcatgaaatgaatcgtaaaactgaaaagaaagcaattaaaatttttaccaa |
44783685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 30617060 - 30616899
Alignment:
| Q |
22 |
tacaccactaaagttgttgcattggagatgtagagttacagttcacgtctggaaaaaggaatttgttctatagaaagtgatgcatgctccatagata-ga |
120 |
Q |
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| T |
30617060 |
tacaccactaaagttgttgcattcgagatgtggagttgtaattcacgcccg--aaaaggaaattattctctatgacgtgatgcatgctccatagataaga |
30616963 |
T |
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| Q |
121 |
aagaatcttatttacgaatttctaataaatgagattgggttcactcagactcaaagatagactt |
184 |
Q |
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| T |
30616962 |
aagaatcttgtttacaaatttctactaaataagtttgagttcactcaaatttaaagagagactt |
30616899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 30627894 - 30627747
Alignment:
| Q |
22 |
tacaccactaaagttgttgcattggagatgtagagttacagttcacgtctggaaaaaggaatttgttctatagaaagtgatgcatgctccatagata-ga |
120 |
Q |
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| T |
30627894 |
tacaccactaaagttgtggcattcgagatgtggagttgtaattcacgcccg-aaaaagaaaattattttctatgacgtgatgcatgctccatggataaga |
30627796 |
T |
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| Q |
121 |
aagaatcttatttacgaatttctaataaatgagattgggttcactcaga |
169 |
Q |
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| T |
30627795 |
aagaatcttgtttacaaatttctactaaataagtttgagttcactcaga |
30627747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 30616757 - 30616696
Alignment:
| Q |
313 |
tccccatattttcaatgagttttattaagagta-caaattgttcatgaaacaactacatctt |
373 |
Q |
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| T |
30616757 |
tccccacatttacaatgagttttataaagagtatgaaattattcatgaaacaactatatctt |
30616696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 9912415 - 9912354
Alignment:
| Q |
313 |
tccccatattttcaatgagttttattaagagtacaaa-ttgttcatgaaacaactacatctt |
373 |
Q |
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| T |
9912415 |
tccccacattttcaatgagttttatttagagtacaaacttattcatgaaacaactacatctt |
9912354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 15415872 - 15415961
Alignment:
| Q |
320 |
attttcaatgagttttattaagagtacaaattg-ttcatgaaacaactacatcttgt--tcatgaaatgaatcgtaaaactgaaaagaaa |
406 |
Q |
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| T |
15415872 |
attttcattgagttttatctagagtacaaatttattcatgaaacaactacatcttattatcctgaaatgaacagtgaaactgaaaagaaa |
15415961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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