View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11746_low_9 (Length: 634)
Name: NF11746_low_9
Description: NF11746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11746_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 175 - 624
Target Start/End: Complemental strand, 15393916 - 15393457
Alignment:
| Q |
175 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaatt |
274 |
Q |
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| T |
15393916 |
tgccaagtcaaagcaaggattcaaacaaatctataagtttggattgaagccggcaaacttcatatttgagtgaacttcattttgcaagctgaactcaatt |
15393817 |
T |
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| Q |
275 |
ttattgtatttttaaaattggggtagagtgtagtgannnnnnnnnnnnnnnnnaagtgacatcaacgatcattttacatcatttctcgagtgatattatt |
374 |
Q |
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| T |
15393816 |
ttattgtatttttaaaattggggaagagtgtagtgatattattattattattaaagtgacatcaacgatcattttacatcatttctcgagtgatattatg |
15393717 |
T |
|
| Q |
375 |
atttattgaaaatcaaacaaagattttctatctatctaactttttgaactgatgtttgagggctcctaacagaaaacaaaacattct-------gaagca |
467 |
Q |
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| T |
15393716 |
atttattgaaaatcaaacaaagattttctttctatctaactttttgaactgatgtttgagggctcctaacagaaaacaaaacatgctctttaatgaagca |
15393617 |
T |
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| Q |
468 |
aaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaacaaattatttaacaaatgtccgttcttcccaacatattgtcac |
567 |
Q |
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| T |
15393616 |
aaagtaaaacacttcactgggtggttccattcatcaacaagattttagctaagtaaacaaattatttaacaaatgtccgttcttcccaacataatgtctc |
15393517 |
T |
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| Q |
568 |
accgccgatcctcaacgacgccaaatcaccaccgtgta---acagatatgtaactctctg |
624 |
Q |
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| T |
15393516 |
accgccgatcctcaacgacgccaaatcaccaccgtgtaattacagatatgtaactctctg |
15393457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15394096 - 15393980
Alignment:
| Q |
1 |
ttatcattctcttcatcaatctctaacggtgaagccatttcgaactgtattcaataacttccaactactaatttctatctgatactcccttgtcatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15394096 |
ttatcattctcttcatcaatctctaacggtgaagccatttcgaactgtattcaataacttccaactactaatttctatctgatactcccttgtcctcagt |
15393997 |
T |
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| Q |
101 |
gtaaccctaaccatcac |
117 |
Q |
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| T |
15393996 |
gtaaccctaaccatcac |
15393980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15385661 - 15385586
Alignment:
| Q |
1 |
ttatcattctcttcatcaatctctaacggtgaagccatttcgaactgtattcaataacttccaactactaatttct |
76 |
Q |
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|||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||| |||| |||| |
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| T |
15385661 |
ttatcattctcttcgtcaatctctaacggcgaagccatttagaacttgattcaataacttccaactcctaagttct |
15385586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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