View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_high_10 (Length: 420)

Name: NF11747_high_10
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_high_10
NF11747_high_10
[»] chr2 (5 HSPs)
chr2 (59-404)||(17564488-17564834)
chr2 (165-303)||(33241303-33241441)
chr2 (165-303)||(33249224-33249362)
chr2 (16-52)||(17564423-17564459)
chr2 (175-224)||(22996309-22996359)
[»] chr4 (2 HSPs)
chr4 (113-303)||(13306273-13306455)
chr4 (128-239)||(10327672-10327785)
[»] chr8 (1 HSPs)
chr8 (116-303)||(24497421-24497604)
[»] chr7 (2 HSPs)
chr7 (128-227)||(9763418-9763514)
chr7 (165-237)||(18360974-18361045)
[»] chr3 (2 HSPs)
chr3 (123-222)||(19642891-19642988)
chr3 (128-224)||(15552725-15552825)
[»] chr6 (2 HSPs)
chr6 (122-223)||(16742985-16743084)
chr6 (263-312)||(16742890-16742939)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 59 - 404
Target Start/End: Original strand, 17564488 - 17564834
Alignment:
Q  59 tttatgcttctgatacactctcttaactctgttgctttaactgtcttatatacattgcttacaatcatgttttatccaatcttttcttactctttcatat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17564488 tttatgcttctgatacactctcttaactctgttgctttaactgtcttatatacattgcttacaatcatgttttatccaatcttttcttactctttcatat 17564587  T
Q  159 ttattatttttgatgatgacaaaaggggagtaagacatataagcatttaggctctcagtccactaagtttaaaataaaatttcacttagaaatcaactac 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  17564588 ttattatttttgatgatgacaaaaggggagtaagacatataagcatttaggctctcagtccactaagttaaaaataaaatttgacttagaaatcaactac 17564687  T
Q  259 ttacctcttagcctctcgatttaatgtga-tttctttctgagtgatacattattattaattttgaacttaaaagcttagaaaacttacatttagaactat 357  Q
    ||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  17564688 ttatctcttagcctctggatttaatgtgattttttttctgagtgatacattattattaattttgaacttaaaaacttagaaaacttacattgagaactat 17564787  T
Q  358 taggcttagcgtgccaaatatgcaattttatttattcagcatgccac 404  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  17564788 taggcttagcgtgccaaatatgcaattttatctattcagcatgccac 17564834  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 33241441 - 33241303
Alignment:
Q  165 tttttgatgatgacaaaagggg-agtaagacata-taagcatttaggctctcagtccactaagtttaaaataaaatttcacttagaaatcaactacttac 262  Q
    |||||| ||||||||||||||| ||||||||||| ||||   ||||||||| |||  ||||||||  || | ||| || |||||| ||  | || ||||     
T  33241441 tttttgttgatgacaaaagggggagtaagacataataagtgcttaggctctgagtttactaagtt--aatttaaaattgacttaggaacaatcttcttat 33241344  T
Q  263 ctcttagcctctcgatttaatgtgatttctttctgagtgat 303  Q
    |||||||||||| |||||||||||||||| ||| |||||||    
T  33241343 ctcttagcctctagatttaatgtgatttcattccgagtgat 33241303  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 303
Target Start/End: Complemental strand, 33249362 - 33249224
Alignment:
Q  165 tttttgatgatgacaaaagggg-agtaagacata-taagcatttaggctctcagtccactaagtttaaaataaaatttcacttagaaatcaactacttac 262  Q
    |||||| ||||||||||||||| ||||||||||| ||||   ||||||||| |||  ||||||||  || | ||| || |||||| ||  | || ||||     
T  33249362 tttttgttgatgacaaaagggggagtaagacataataagtgcttaggctctgagtttactaagtt--aatttaaaattgacttaggaacaatcttcttat 33249265  T
Q  263 ctcttagcctctcgatttaatgtgatttctttctgagtgat 303  Q
    |||||||||||| |||||||||||||||| ||| |||||||    
T  33249264 ctcttagcctctagatttaatgtgatttcattccgagtgat 33249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 17564423 - 17564459
Alignment:
Q  16 cacacctttcatgttttatcttcttagtgtttttgat 52  Q
    |||||||||||||||||||||||||||||||| ||||    
T  17564423 cacacctttcatgttttatcttcttagtgtttctgat 17564459  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 22996309 - 22996359
Alignment:
Q  175 tgacaaaagggg-agtaagacatataagcatttaggctctcagtccactaa 224  Q
    |||||||||||| |||||||||||| | |||||||||||| ||||||||||    
T  22996309 tgacaaaagggggagtaagacatattaacatttaggctctgagtccactaa 22996359  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 13306273 - 13306455
Alignment:
Q  113 ttgcttacaatcatgttttatccaatcttttcttactctttcatatttattatttttgatgatgacaaaaggggagtaagacatataagcatttaggctc 212  Q
    ||||||| ||| |||||||||||||||||||||||||||||     | |||||||||| |||||| ||||||||||||||||||||||| ||||||| |     
T  13306273 ttgcttataataatgttttatccaatcttttcttactcttt-----tcattatttttgttgatgagaaaaggggagtaagacatataagtatttaggttg 13306367  T
Q  213 tcagtccactaagtttaaaataaaatttcacttagaaatcaactacttacctcttagcctctcgatttaatgtgatttctttctgagtgat 303  Q
      |||||||||| |  |   |||||||| |||||| |||||||| ||||||||||||| | | |||||||||||||||| || ||||||||    
T  13306368 --agtccactaaatacatt-taaaatttaacttaggaatcaacttcttacctcttagcttatggatttaatgtgatttcattatgagtgat 13306455  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 10327672 - 10327785
Alignment:
Q  128 ttttatccaatcttttcttactctttcatattta-ttatttttgatgatgacaaaagggg-agtaagacatataa--gcatttaggctctcagtccacta 223  Q
    ||||||||||||||||||||||||||  |  | | || |||||| ||||||||||||||| ||||||||||||||  ||||||||||||| ||||| |||    
T  10327672 ttttatccaatcttttcttactctttttttataacttttttttgttgatgacaaaagggggagtaagacatataatggcatttaggctctgagtccgcta 10327771  T
Q  224 agtttaaaataaaatt 239  Q
    ||||  ||||||||||    
T  10327772 agtt--aaataaaatt 10327785  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 303
Target Start/End: Original strand, 24497421 - 24497604
Alignment:
Q  116 cttacaatcatgtttt-atccaatcttttcttactctttcatatttattatttttgatgatgacaaaaggggagtaagacatataagcatttaggctctc 214  Q
    |||| ||||||||||| || ||||||||||||||| |||    |  ||||||||| ||||||||||||||||||||| | ||||||| |||||||||||     
T  24497421 cttataatcatgtttttattcaatcttttcttacttttt----tcaattattttttatgatgacaaaaggggagtaaaatatataagtatttaggctctg 24497516  T
Q  215 agtccactaagtttaaaataaaatttcacttagaaatcaactacttacctcttagcctctcgatttaatgtgatttctttctgagtgat 303  Q
    |||||  |||| | ||  |||||||  |||||  |||||||| || ||||||| |||||  | |||||||||||||| |||| ||||||    
T  24497517 agtcctataag-taaatttaaaattggacttaagaatcaacttctcacctctttgcctcgggttttaatgtgatttcattcttagtgat 24497604  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 9763514 - 9763418
Alignment:
Q  128 ttttatccaatcttttcttactctttcatatttattatttttgatgatgacaaaagg-ggagtaagacatataagcatttaggctctcagtccactaagt 226  Q
    ||||||||||||||||||||||||||    |  || ||||||| ||||||||||||| |||||||||||||  |||||  ||||||| ||||||||||||    
T  9763514 ttttatccaatcttttcttactcttt----tcaataatttttgttgatgacaaaaggaggagtaagacataatagcatccaggctctgagtccactaagt 9763419  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 18360974 - 18361045
Alignment:
Q  165 tttttgatgatgacaaaaggggagtaagacatataagcatttaggctctcagtccactaagtttaaaataaaa 237  Q
    |||||| |||||||||||||||||||||| |||  | |||||||||||| |||||||||| || ||| |||||    
T  18360974 tttttgttgatgacaaaaggggagtaagatatagta-catttaggctctaagtccactaaattaaaattaaaa 18361045  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 19642891 - 19642988
Alignment:
Q  123 tcatgttttatccaatcttttcttactctttcatatttattatttttgatgatgacaaaa-ggggagtaagacatata--agcatttaggctctcagtcc 219  Q
    |||||||||||||||| |||||||||||||     ||||| ||||||| ||||||||||| ||||||||||||| |||  || ||||||||||| |||||    
T  19642891 tcatgttttatccaatattttcttactctt-----tttataatttttgttgatgacaaaagggggagtaagacacataatagtatttaggctctgagtcc 19642985  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 15552825 - 15552725
Alignment:
Q  128 ttttatccaatcttttcttactctttc-atattt-attatttttgatgatgacaaaa-ggggagtaagacatataag--catttaggctctcagtccact 222  Q
    ||||||||| ||||||||||||||||  |||||| | | |||||| ||||||||||| ||||||||||| ||||||   |||||||||||| ||||||||    
T  15552825 ttttatcca-tcttttcttactctttttatattttagtctttttgttgatgacaaaacggggagtaagatatataatgacatttaggctctgagtccact 15552727  T
Q  223 aa 224  Q
    ||    
T  15552726 aa 15552725  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 16743084 - 16742985
Alignment:
Q  122 atcatgttttatccaatcttttcttactctttcatatttattatttttgatgatgacaaaaggg-gagtaagacatataagcatttaggctctcagtcca 220  Q
    ||||||||||||||||||||||||||||||||   |   |||||||||| |||||| ||||||| |||||||| |||  ||  |||||||||| ||||||    
T  16743084 atcatgttttatccaatcttttcttactcttttcaa---attatttttgttgatgataaaagggagagtaagatataatagtgtttaggctctgagtcca 16742988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 16742939 - 16742890
Alignment:
Q  263 ctcttagcctctcgatttaatgtgatttctttctgagtgatacattatta 312  Q
    |||||||||||| |||||||||||| ||  ||||||||||||| ||||||    
T  16742939 ctcttagcctctggatttaatgtgaattgattctgagtgatacgttatta 16742890  T

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