View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_high_12 (Length: 386)

Name: NF11747_high_12
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_high_12
NF11747_high_12
[»] chr4 (10 HSPs)
chr4 (180-386)||(12583235-12583438)
chr4 (7-115)||(12583502-12583610)
chr4 (180-382)||(21801279-21801477)
chr4 (200-386)||(45892683-45892865)
chr4 (197-386)||(48665785-48665971)
chr4 (7-109)||(45892945-45893049)
chr4 (7-115)||(21801111-21801221)
chr4 (340-383)||(53591851-53591894)
chr4 (341-384)||(17417025-17417068)
chr4 (344-386)||(9733988-9734030)
[»] chr6 (2 HSPs)
chr6 (182-386)||(23661241-23661441)
chr6 (7-115)||(23661078-23661188)
[»] scaffold0527 (4 HSPs)
scaffold0527 (181-382)||(3327-3524)
scaffold0527 (181-382)||(11390-11587)
scaffold0527 (21-107)||(3588-3674)
scaffold0527 (21-107)||(11651-11737)
[»] chr7 (9 HSPs)
chr7 (182-386)||(23773364-23773566)
chr7 (181-385)||(26470191-26470393)
chr7 (181-385)||(26546631-26546833)
chr7 (180-386)||(12119847-12120048)
chr7 (7-109)||(23773201-23773305)
chr7 (21-109)||(26470041-26470129)
chr7 (21-109)||(26546481-26546569)
chr7 (342-385)||(32864692-32864735)
chr7 (14-75)||(11275943-11276006)
[»] scaffold0219 (2 HSPs)
scaffold0219 (181-362)||(5956-6133)
scaffold0219 (7-106)||(6198-6299)
[»] chr5 (3 HSPs)
chr5 (197-386)||(32538040-32538227)
chr5 (335-386)||(1954086-1954137)
chr5 (342-386)||(35247476-35247520)
[»] chr3 (3 HSPs)
chr3 (181-386)||(5999915-6000114)
chr3 (7-109)||(6000177-6000281)
chr3 (340-386)||(23779966-23780012)
[»] chr1 (1 HSPs)
chr1 (182-386)||(16178692-16178892)
[»] chr2 (5 HSPs)
chr2 (215-381)||(31266786-31266950)
chr2 (22-109)||(36658202-36658289)
chr2 (181-373)||(36658351-36658534)
chr2 (291-382)||(29463833-29463924)
chr2 (346-386)||(42236702-42236742)
[»] chr8 (1 HSPs)
chr8 (277-358)||(923781-923862)
[»] scaffold0002 (1 HSPs)
scaffold0002 (342-386)||(347032-347076)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 12583438 - 12583235
Alignment:
Q  180 ccgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgactt 279  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||    |||   |||    
T  12583438 ccgtggagatgaagatggggtggttactttgtttcggctctgtgattttgtctgaaaatcatgaatctggttttctggattaaagata---tgggttctt 12583342  T
Q  280 tagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgtt 379  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12583341 tagttatgttgttgttctgttggatgcatatctcgatttaacacaattggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgtt 12583242  T
Q  380 gacggta 386  Q
    |||||||    
T  12583241 gacggta 12583235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 12583610 - 12583502
Alignment:
Q  7 ctttcagagtcttggtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttag 106  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12583610 ctttcatagtcatggtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttag 12583511  T
Q  107 tcttgatct 115  Q
    |||||||||    
T  12583510 tcttgatct 12583502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 382
Target Start/End: Original strand, 21801279 - 21801477
Alignment:
Q  180 ccgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgactt 279  Q
    |||||| |||||||||||| || ||||||| || ||||| |||||||||||||||||| | ||||||| |||||||||||||||||    |  ||  |||    
T  21801279 ccgtggtgatgaagatggg-tgatgactttatttcggctctgtgattttgtctgaaaatcttgaatcttgttttctggattgaagacacag--gtt-ctt 21801374  T
Q  280 tagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgtt 379  Q
    ||||| ||  |||||||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||| | |||||||| ||||||||||||||||    
T  21801375 tagttctggtgttgttctattggatgcatatctcgatttaacatgactggttttatcctgatgttgctcgaatgagctaggtgcgtagatgctccgtgtt 21801474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 386
Target Start/End: Complemental strand, 45892865 - 45892683
Alignment:
Q  200 tggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaag--atggggtggtgactttagttatgtcgttgttct 297  Q
    ||||||||||||| ||||  |||||||| ||||||||| | |||||||||||||||||||| |||  ||||| |     |||||||| || |||||||||    
T  45892865 tggtgactttgtttcggcaatgtgattt-gtctgaaaatcttgaatctggttttctggattaaaggtatgggtt-----ctttagttctggcgttgttct 45892772  T
Q  298 gttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    ||||||||||||||| |||| ||||   ||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||    
T  45892771 gttggatgcatatcttgattcaacatgtctggttttatcctgatgttgctcaaaagggctaggtgcctagatgctccgtgttgacggta 45892683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 197 - 386
Target Start/End: Original strand, 48665785 - 48665971
Alignment:
Q  197 gggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaag--atggggtggtgactttagttatgtcgttgt 294  Q
    |||||||||||||||| |  || ||| |||||||||||||| | ||| ||| |||||||||||||||   ||||| |     |||||||| || | ||||    
T  48665785 gggtggtgactttgtttccactctgtcattttgtctgaaaatcttgattcttgttttctggattgaaagtatgggtt-----ctttagttctggctttgt 48665879  T
Q  295 tctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    ||||||||||||||| ||||||| ||||  |||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||    
T  48665880 tctgttggatgcatagctcgattcaacatgactggttttatcctgatgttgctcaaaagagctaggtgcgtagatgctccgtgttgacggta 48665971  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 45893049 - 45892945
Alignment:
Q  7 ctttcagagtcttggtgtgt--tgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    |||| |||||||||||||||  ||||| |||||| ||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  45893049 cttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaacatcgttgttgtcttatagagctatggtgttgacgcgattatgagtt 45892950  T
Q  105 agtct 109  Q
    |||||    
T  45892949 agtct 45892945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 21801111 - 21801221
Alignment:
Q  7 ctttcagagtcttggtgt--gttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    |||||| |||||||||||  ||||||| |||||| ||||||||||| |||||||| ||| |||||||||||||| ||||||||||||| ||||||| | |    
T  21801111 ctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgattatgtggt 21801210  T
Q  105 agtcttgatct 115  Q
    ||||| |||||    
T  21801211 agtctcgatct 21801221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 53591894 - 53591851
Alignment:
Q  340 atgttgctcgaaagggctaggtgtgtagatgctccgtgttgacg 383  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  53591894 atgttgctcgaaagggctaggtgcgtagacgctccgtgttgacg 53591851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 17417068 - 17417025
Alignment:
Q  341 tgttgctcgaaagggctaggtgtgtagatgctccgtgttgacgg 384  Q
    |||||||| |||| |||||||||||||||||| |||||||||||    
T  17417068 tgttgctcaaaagagctaggtgtgtagatgcttcgtgttgacgg 17417025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 9733988 - 9734030
Alignment:
Q  344 tgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||||||| |||||| ||||| |||||||||||||||||    
T  9733988 tgctcgaaagggttaggtgcgtagacgctccgtgttgacggta 9734030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 386
Target Start/End: Original strand, 23661241 - 23661441
Alignment:
Q  182 gtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgacttta 281  Q
    ||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||||||   ||||||||||||||||||||||| ||    |||   |||||    
T  23661241 gtggaaatgaagatggg-tggtgaatttgtttcggctatgtgattttgtctgaaaatattgaatctggttttctggattgaatata---tgggttcttta 23661336  T
Q  282 gttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttga 381  Q
    ||| ||  |||||||||| |||| |||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23661337 gttctggtgttgttctgtaggattcatatctcgattcaacatgactggttttatcctgatgttgctcgaaagggctaggtgcgtagatgctccgtgttga 23661436  T
Q  382 cggta 386  Q
    |||||    
T  23661437 cggta 23661441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 23661078 - 23661188
Alignment:
Q  7 ctttcagagtcttggtgt--gttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    ||||||| ||||||||||  ||||||| |||||| ||||||||||||||||||  |||| |||||||||||||||| |||||||| ||||||||||||||    
T  23661078 ctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgttgtcttgtagagctatggtgttggcgcgattatgagtt 23661177  T
Q  105 agtcttgatct 115  Q
    ||||| |||||    
T  23661178 agtctcgatct 23661188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 382
Target Start/End: Complemental strand, 3524 - 3327
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgacttt 280  Q
    |||||| ||||||||||| ||||||||||||| ||||| || |||||||||| |||| | |||||||||||||||||||||||| |  ||  ||  |||     
T  3524 cgtggaaatgaagatggg-tggtgactttgtttcggctatgagattttgtctaaaaatcttgaatctggttttctggattgaaggtatgg--gttcctta 3428  T
Q  281 agttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttg 380  Q
    | |  ||| |||||| ||||||||||||||||| ||| ||||  |||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||    
T  3427 attcttgt-gttgttatgttggatgcatatctctattcaacatgactggttttatcctgatgttgctcgaaagggctaggtgcatagatgctccgtgatg 3329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 382
Target Start/End: Complemental strand, 11587 - 11390
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgacttt 280  Q
    |||||| ||||||||||| ||||||||||||| ||||| || |||||||||| |||| | |||||||||||||||||||||||| |  ||  ||  |||     
T  11587 cgtggaaatgaagatggg-tggtgactttgtttcggctatgagattttgtctaaaaatcttgaatctggttttctggattgaaggtatgg--gttcctta 11491  T
Q  281 agttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttg 380  Q
    | |  ||| |||||| ||||||||||||||||| ||| ||||  |||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||    
T  11490 attcttgt-gttgttatgttggatgcatatctctattcaacatgactggttttatcctgatgttgctcgaaagggctaggtgcatagatgctccgtgatg 11392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 3674 - 3588
Alignment:
Q  21 gtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttagt 107  Q
    ||||||||||| |||||| ||  |||||||||||||| ||||| |||||||| ||||||| |||| |||||| ||||||||||||||    
T  3674 gtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgattatgagttagt 3588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 11737 - 11651
Alignment:
Q  21 gtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttagt 107  Q
    ||||||||||| |||||| ||  |||||||||||||| ||||| |||||||| ||||||| |||| |||||| ||||||||||||||    
T  11737 gtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgattatgagttagt 11651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 386
Target Start/End: Original strand, 23773364 - 23773566
Alignment:
Q  182 gtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggatt-gaagatggggtggtgacttt 280  Q
    ||||| ||||||||| | |||||| |||||| ||||| ||||||||||||| |||| | |||||||||||||||||||| ||||||  ||  ||   |||    
T  23773364 gtggaaatgaagatgag-tggtgaatttgtttcggctctgtgattttgtctaaaaatcttgaatctggttttctggatttgaagatatgg--gttttttt 23773460  T
Q  281 agttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttg 380  Q
    |||| || | ||||| ||||||||||||||||||||| ||||  |||||||||||| |||||||  | |||| |||||||||||||||||||| ||||||    
T  23773461 agttctggcattgttttgttggatgcatatctcgattcaacatgactggttttatcataatgttctttgaaacggctaggtgtgtagatgctctgtgttg 23773560  T
Q  381 acggta 386  Q
    ||||||    
T  23773561 acggta 23773566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 26470191 - 26470393
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctga--aaaccatgaatctggttttctggattgaagatggggtggtgact 278  Q
    |||||| ||||||||||| ||||||||||||| || || ||||||||| | |    ||| | ||||||||||||||||||||||||||    |||   ||    
T  26470191 cgtggaaatgaagatggg-tggtgactttgtttcgactatgtgattttttttttttaaatcttgaatctggttttctggattgaagata---tgggttct 26470286  T
Q  279 ttagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgt 378  Q
    |||||| || | || || ||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  26470287 ttagttttggcattcttttgttggatgcatatctcgattcaacatgactggttttatcctaatgttcctcgaaagggctaggtgcgtagatgctccatgt 26470386  T
Q  379 tgacggt 385  Q
    |||||||    
T  26470387 tgacggt 26470393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 26546631 - 26546833
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctga--aaaccatgaatctggttttctggattgaagatggggtggtgact 278  Q
    |||||| ||||||||||| ||||||||||||| || || ||||||||| | |    ||| | ||||||||||||||||||||||||||    |||   ||    
T  26546631 cgtggaaatgaagatggg-tggtgactttgtttcgactatgtgattttttttttttaaatcttgaatctggttttctggattgaagata---tgggttct 26546726  T
Q  279 ttagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgt 378  Q
    |||||| || | || || ||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  26546727 ttagttttggcattcttttgttggatgcatatctcgattcaacatgactggttttatcctaatgttcctcgaaagggctaggtgcgtagatgctccatgt 26546826  T
Q  379 tgacggt 385  Q
    |||||||    
T  26546827 tgacggt 26546833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 180 - 386
Target Start/End: Original strand, 12119847 - 12120048
Alignment:
Q  180 ccgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgactt 279  Q
    ||||||||||||| ||||| ||||| |||||||||||  || |||||| ||| ||||| | |||||||||||   |||||||| |||    |||   |||    
T  12119847 ccgtggagatgaaaatggg-tggtggctttgttccggtctt-tgatttggtcagaaaatcttgaatctggttcaatggattgacgata---tgggttctt 12119941  T
Q  280 tagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgtt 379  Q
    ||||| || ||||||| ||||| ||||||||||||||| ||||  || ||||||||||| ||||||||||||||||||||||||||||||| || |||||    
T  12119942 tagttttggcgttgttttgttgaatgcatatctcgattgaacatgacaggttttatcctgatgttgctcgaaagggctaggtgtgtagatgttctgtgtt 12120041  T
Q  380 gacggta 386  Q
    |||||||    
T  12120042 gacggta 12120048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 23773201 - 23773305
Alignment:
Q  7 ctttcagagtcttggtgt--gttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    ||||||||||||||||||  ||||||| |||||| ||||||||||| ||| ||| |||| ||||| |||||||||| |||||||||||||||||||||||    
T  23773201 ctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaacatcgtcgttgtattgtagagctatggtgttgacgcgattatgagtt 23773300  T
Q  105 agtct 109  Q
    |||||    
T  23773301 agtct 23773305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 26470041 - 26470129
Alignment:
Q  21 gtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttagtct 109  Q
    ||||||||||| ||| || ||||||||||||||||||| |||| |  ||||||||||||| ||||||||||||||||||||||||||||    
T  26470041 gtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacgcgattatgagttagtct 26470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 26546481 - 26546569
Alignment:
Q  21 gtgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttagtct 109  Q
    ||||||||||| ||| || ||||||||||||||||||| |||| |  ||||||||||||| ||||||||||||||||||||||||||||    
T  26546481 gtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacgcgattatgagttagtct 26546569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 385
Target Start/End: Complemental strand, 32864735 - 32864692
Alignment:
Q  342 gttgctcgaaagggctaggtgtgtagatgctccgtgttgacggt 385  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  32864735 gttgctcgaaagagctaggtgtatagatgctccgtgttgacggt 32864692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 11275943 - 11276006
Alignment:
Q  14 agtcttggtgtg--ttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgta 75  Q
    ||||||||||||  |||||||| |||| ||||||| ||| || |||||||||||||||||||||    
T  11275943 agtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttgtcttgta 11276006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 362
Target Start/End: Complemental strand, 6133 - 5956
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaag--atggggtggtgact 278  Q
    |||||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||  ||||| |     ||    
T  6133 cgtggaaatgaagatggg-tggtgactttgtttcggctctgtgattttgtctgaaaatcttgaatctggttttctggattgaaggtatgggtt-----ct 6040  T
Q  279 ttagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtg 362  Q
    ||  || ||  | |||| ||||||||||||||||||||| ||||  ||||||| |||||| |||||||||||||||||||||||    
T  6039 ttcattctggtgctgttatgttggatgcatatctcgattcaacatgactggttgtatcctgatgttgctcgaaagggctaggtg 5956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 6299 - 6198
Alignment:
Q  7 ctttcagagtcttggtgtgt--tgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    ||||||||||||||||||||  ||||| |||||| ||||||||||||||| ||||| || |||||||||||||| | ||||||| |||||||||||||||    
T  6299 ctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaacgtagtcgttgtcttgtagagttatggtgttaacgcgattatgagtt 6200  T
Q  105 ag 106  Q
    ||    
T  6199 ag 6198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 386
Target Start/End: Complemental strand, 32538227 - 32538040
Alignment:
Q  197 gggtggtgactttgttccggctttgtgattttg-tctgaaaaccatgaatctggttttctggattgaagatggggtggtgactttagttatgtcgttgtt 295  Q
    ||||||||  |||||||||||| |||||||||| |||||||| | ||||| || ||||  | |||||||||  ||  ||  |||||||||||  ||||||    
T  32538227 gggtggtggatttgttccggctctgtgattttggtctgaaaatcttgaatttgatttttcgaattgaagatacgg--gtt-ctttagttatggggttgtt 32538131  T
Q  296 ctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    ||||||||||||||||| |||| |||| || |||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  32538130 ctgttggatgcatatctagattcaacataattggttttatcttgatgttgctcgaaagggctaggtgcatagatgctccgtgttgacggta 32538040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 1954086 - 1954137
Alignment:
Q  335 tcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  1954086 tcctaatgttgctcgaaagggctaggtgcgtagacgctctgtgttgacggta 1954137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 35247476 - 35247520
Alignment:
Q  342 gttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  35247476 gttgctcgaaagagctaggtgcgtagatgctccgtgttgacggta 35247520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 386
Target Start/End: Complemental strand, 6000114 - 5999915
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgacttt 280  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| |||| |  |||||||||||| ||||||||||||    |||   ||||    
T  6000114 cgtggaaatgaagatggg-tggtgactttgtttcggctctgtgattttgtctaaaaatctcgaatctggttttttggattgaagata---tgggttcttt 6000019  T
Q  281 agttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttg 380  Q
    |||| || | || || || |||||||||||||||||| ||||  |||||||||||| ||| ||| ||||||||||||||||| |||||||||| ||||||    
T  6000018 agttctggc-ttctt-tgatggatgcatatctcgattcaacatgactggttttatcttaaggttcctcgaaagggctaggtgcgtagatgctctgtgttg 5999921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 6000281 - 6000177
Alignment:
Q  7 ctttcagagtcttggtgtgt--tgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagtt 104  Q
    |||| |||||||||||||||  ||||| |||||| ||||||||||||||||||| |||| |  ||||||||||||| |||||||||||||||||||||||    
T  6000281 cttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacgcgattatgagtt 6000182  T
Q  105 agtct 109  Q
    |||||    
T  6000181 agtct 6000177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 23779966 - 23780012
Alignment:
Q  340 atgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||    
T  23779966 atgttgctcgaaagggttaggtgcgtagacgctccgtgttgacggta 23780012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 386
Target Start/End: Complemental strand, 16178892 - 16178692
Alignment:
Q  182 gtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaagatggggtggtgacttta 281  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||||| || |||||| | |||||||| ||||||| ||| | |||    |||   |||||    
T  16178892 gtggagatgaagatggg-tggtggctttgtttcggctatgtgatttggtatgaaaatcttgaatctgattttctgaattaatgata---tgggttcttta 16178797  T
Q  282 gttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttga 381  Q
     ||| |  |||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||||||| ||| || |||||||| |||||||||    
T  16178796 tttagggtgttgttctgttggatgcatatctcgattcaacatgactgcttttatcctaatgttgcttgaaagggttagttgcgtagatgccccgtgttga 16178697  T
Q  382 cggta 386  Q
     ||||    
T  16178696 tggta 16178692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 381
Target Start/End: Original strand, 31266786 - 31266950
Alignment:
Q  215 ggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaaga--tggggtggtgactttagttatgtcgttgttctgttggatgcatatct 312  Q
    ||||||||||||| ||||||||| | |||| |||||||| |||||||||||  ||||||     |||||||| ||  |||||||| ||||||||||||||    
T  31266786 ggctttgtgatttggtctgaaaatcttgaagctggttttttggattgaagacctggggtt----ctttagttttggggttgttctattggatgcatatct 31266881  T
Q  313 cgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttga 381  Q
    ||| | ||||  | |||||||||| | |||||| |||||||||||||||| ||||||||||||||||||    
T  31266882 cgactcaacatgattggttttatcttgatgttgttcgaaagggctaggtgcgtagatgctccgtgttga 31266950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 36658202 - 36658289
Alignment:
Q  22 tgtgttgattatattgtcgtcactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacgcgattatgagttagtct 109  Q
    ||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||  ||||||||||||||    
T  36658202 tgtgtggattctattgtggtcactggtttcgttcaacgtcgttattgtcttgtagagctatgatgttgacgcatttatgagttagtct 36658289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 373
Target Start/End: Original strand, 36658351 - 36658534
Alignment:
Q  181 cgtggagatgaagatggggtggtgactttgttccggctttgtgattttgtctgaaaaccatgaatctggttttctggattgaag--atggggtggtgact 278  Q
    |||||||||||||||||| ||||||||||||| || || ||||||||||| |||||| | | | |||| |||||||||||||||  ||||| |     ||    
T  36658351 cgtggagatgaagatggg-tggtgactttgtttcgactctgtgattttgtttgaaaatcttaagtctgattttctggattgaaggtatgggtt-----ct 36658444  T
Q  279 ttagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctc 373  Q
    |||||| |  | |||||     ||||||||| ||||||| ||||  |||||||||||||| |||||||||||||  |||||||| ||||||||||    
T  36658445 ttagttctagcattgtt-----ggatgcatagctcgattcaacatgactggttttatcctgatgttgctcgaaacagctaggtgcgtagatgctc 36658534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 382
Target Start/End: Original strand, 29463833 - 29463924
Alignment:
Q  291 ttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggctaggtgtgtagatgctccgtgttgac 382  Q
    ||||| ||||||||||||||||||||| ||||  |||| ||||||||||||||| |||||||  |||||||| |||||| | || |||||||    
T  29463833 ttgttttgttggatgcatatctcgattcaacatgactgattttatcctaatgttactcgaaatagctaggtgcgtagattccccatgttgac 29463924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 42236742 - 42236702
Alignment:
Q  346 ctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  42236742 ctcgaaagagctaggtgcgtagatgctccatgttgacggta 42236702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 923781 - 923862
Alignment:
Q  277 ctttagttatgtcgttgttctgttggatgcatatctcgatttaacacaactggttttatcctaatgttgctcgaaagggcta 358  Q
    |||||||| || ||||||| |||||||||||||| |||||| ||||  | |||||||||||| | |||| |||||| |||||    
T  923781 ctttagttctggcgttgttttgttggatgcatatttcgattcaacatgattggttttatcctgaagttgatcgaaatggcta 923862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 347076 - 347032
Alignment:
Q  342 gttgctcgaaagggctaggtgtgtagatgctccgtgttgacggta 386  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||    
T  347076 gttgctcgaaagagctaggtgcgtagatgctctgtgttgacggta 347032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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