View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_high_14 (Length: 353)

Name: NF11747_high_14
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_high_14
NF11747_high_14
[»] chr7 (1 HSPs)
chr7 (1-353)||(47186686-47187035)
[»] chr2 (2 HSPs)
chr2 (99-138)||(16180486-16180525)
chr2 (101-137)||(10459288-10459324)
[»] chr5 (2 HSPs)
chr5 (101-138)||(9956549-9956586)
chr5 (101-138)||(34252739-34252776)
[»] chr4 (1 HSPs)
chr4 (101-138)||(12276842-12276879)
[»] chr8 (1 HSPs)
chr8 (101-137)||(15114639-15114675)
[»] chr6 (1 HSPs)
chr6 (101-137)||(31522660-31522696)
[»] chr1 (2 HSPs)
chr1 (101-137)||(3694039-3694075)
chr1 (104-132)||(12043639-12043667)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 47187035 - 47186686
Alignment:
Q  1 cggtgtttttactgtctctttgctcgactgtgatttatttattttacatggaatgactgtgttgttgtgttgagtttattacactatcttcggtcgacat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47187035 cggtgtttttactgtctctttgttcgactgtgatttatttattttacatggaatgactgtgttgttgtgttgagtttattacactatcttcggtcgacat 47186936  T
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaatttaaggagcgtaaacacttaaaattgaaagtgtgttttgtgcttgatgcatgtgattacagagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186935 ttggtcaacaaaagttgatgtatttgattcaaaatttaaggagcgtaaacacttaaaattgaaagtgtgttttgtgcttgatgcatgtgattacagagaa 47186836  T
Q  201 tttgttttgttttcttaaaatttggtgtaatagtgatctattacaaagaatttgagatgtttcagatgttgcattgcatgttttaagttgttgggatttt 300  Q
    |   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47186835 t---ttttgttttcttaaaatttggtgtaatagtgaactattacaaagaatttgagatgtttcagatgttgcattgcatgttttaagttgttgggatttt 47186739  T
Q  301 atagatcatgtagttgcctgcatagaatgttaggttgctttgagttctgtgct 353  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  47186738 atagatcatgtagttgcctgcatagaatgttaggttgcattgagttttgtgct 47186686  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 16180525 - 16180486
Alignment:
Q  99 atttggtcaacaaaagttgatgtatttgattcaaaattta 138  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  16180525 atttggtcaacaaaagttaatgtatttggttcaaaattta 16180486  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 10459288 - 10459324
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattt 137  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  10459288 ttggtcaacaaaagttaatgtatttggttcaaaattt 10459324  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 9956586 - 9956549
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattta 138  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  9956586 ttggttaacaaaagttaatgtatttgattcaaaattta 9956549  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 34252739 - 34252776
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattta 138  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  34252739 ttggtcaacaaaagttaatgtatttggttcaaaattta 34252776  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 12276842 - 12276879
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattta 138  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  12276842 ttggtcagcaaaagttaatgtatttgattcaaaattta 12276879  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 15114639 - 15114675
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattt 137  Q
    ||||||||||||| || ||||||||||||||||||||    
T  15114639 ttggtcaacaaaaattaatgtatttgattcaaaattt 15114675  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 31522696 - 31522660
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattt 137  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  31522696 ttggtcaacaaaagttaatgcatttgattcaaaattt 31522660  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 3694075 - 3694039
Alignment:
Q  101 ttggtcaacaaaagttgatgtatttgattcaaaattt 137  Q
    ||||||||||||| || ||||||||||||||||||||    
T  3694075 ttggtcaacaaaaattaatgtatttgattcaaaattt 3694039  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 12043639 - 12043667
Alignment:
Q  104 gtcaacaaaagttgatgtatttgattcaa 132  Q
    |||||||||||||||||||||||||||||    
T  12043639 gtcaacaaaagttgatgtatttgattcaa 12043667  T

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