View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_high_17 (Length: 326)

Name: NF11747_high_17
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_high_17
NF11747_high_17
[»] scaffold0116 (2 HSPs)
scaffold0116 (1-66)||(6028-6093)
scaffold0116 (1-66)||(2987-3052)
[»] chr2 (13 HSPs)
chr2 (11-98)||(13242206-13242293)
chr2 (1-93)||(39420191-39420283)
chr2 (1-43)||(41890034-41890076)
chr2 (1-97)||(36528418-36528514)
chr2 (5-74)||(36278318-36278387)
chr2 (1-73)||(14275826-14275898)
chr2 (1-73)||(36285036-36285108)
chr2 (1-73)||(2889177-2889249)
chr2 (5-73)||(13487721-13487789)
chr2 (1-73)||(20061073-20061145)
chr2 (1-98)||(15079899-15079996)
chr2 (1-98)||(32294503-32294600)
chr2 (101-145)||(40443915-40443959)
[»] chr4 (14 HSPs)
chr4 (6-73)||(564129-564196)
chr4 (1-73)||(29508735-29508807)
chr4 (1-43)||(24744019-24744061)
chr4 (1-98)||(50297630-50297727)
chr4 (31-100)||(54997693-54997762)
chr4 (63-111)||(18994572-18994620)
chr4 (5-73)||(27918354-27918422)
chr4 (19-107)||(30033468-30033556)
chr4 (1-72)||(36989904-36989976)
chr4 (1-48)||(20537346-20537393)
chr4 (1-38)||(45249943-45249980)
chr4 (1-73)||(24940701-24940773)
chr4 (3-39)||(40311730-40311766)
chr4 (3-39)||(40321806-40321842)
[»] chr5 (5 HSPs)
chr5 (11-97)||(2987372-2987458)
chr5 (1-99)||(40044793-40044891)
chr5 (11-102)||(12212174-12212265)
chr5 (27-91)||(8221874-8221938)
chr5 (1-56)||(43340350-43340405)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-70)||(530-599)
[»] chr8 (12 HSPs)
chr8 (1-70)||(7774667-7774736)
chr8 (1-70)||(7791314-7791383)
chr8 (1-70)||(7811898-7811967)
chr8 (1-102)||(8867253-8867353)
chr8 (11-102)||(13933038-13933129)
chr8 (1-72)||(21372514-21372585)
chr8 (1-98)||(6530377-6530474)
chr8 (1-41)||(39491662-39491702)
chr8 (3-74)||(35865205-35865276)
chr8 (3-73)||(42685782-42685852)
chr8 (1-73)||(31313378-31313450)
chr8 (1-72)||(34576759-34576831)
[»] chr3 (11 HSPs)
chr3 (3-103)||(39430333-39430433)
chr3 (1-72)||(47006667-47006738)
chr3 (1-73)||(18030059-18030131)
chr3 (1-73)||(13637961-13638033)
chr3 (23-73)||(53459684-53459734)
chr3 (5-74)||(51325490-51325558)
chr3 (1-56)||(33791550-33791605)
chr3 (3-73)||(4539929-4539999)
chr3 (5-43)||(39905456-39905494)
chr3 (1-98)||(45628382-45628479)
chr3 (3-71)||(52859539-52859607)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-57)||(12478-12534)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-72)||(13063-13134)
[»] chr6 (5 HSPs)
chr6 (1-72)||(5849990-5850061)
chr6 (1-35)||(2831429-2831463)
chr6 (1-73)||(1065659-1065731)
chr6 (3-61)||(30249217-30249275)
chr6 (50-95)||(30438357-30438402)
[»] chr7 (6 HSPs)
chr7 (3-73)||(26080991-26081061)
chr7 (3-73)||(26104778-26104848)
chr7 (1-98)||(32786861-32786958)
chr7 (1-98)||(7907524-7907620)
chr7 (3-72)||(28337277-28337346)
chr7 (5-70)||(47990964-47991029)
[»] chr1 (10 HSPs)
chr1 (1-43)||(8644734-8644776)
chr1 (1-73)||(31635512-31635584)
chr1 (3-73)||(11017960-11018030)
chr1 (1-70)||(11420884-11420953)
chr1 (1-98)||(5799732-5799829)
chr1 (3-56)||(14758782-14758835)
chr1 (1-74)||(31262630-31262703)
chr1 (101-142)||(31866785-31866826)
chr1 (5-73)||(25366810-25366878)
chr1 (10-70)||(26952033-26952093)


Alignment Details
Target: scaffold0116 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6093 - 6028
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttcctta 66  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  6093 attcaacttcttaaaaattaaaatgttatgttttcaaatgcaaaattactctttgtaagttcctta 6028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3052 - 2987
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttcctta 66  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||| ||||||||    
T  3052 attcaacttcttaaaagttaaaatgttatgttttcaaatgcaaaattaatctttttaggttcctta 2987  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 13242206 - 13242293
Alignment:
Q  11 ttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||  ||||   ||||||||| ||||||    
T  13242206 ttaaaatttaaaatgttatgttttccaatgcaaaattactctttttaagttctttaacatgtgccataagtgcacaagttaacatgac 13242293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39420283 - 39420191
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagc 93  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||  || ||||||||| |||||||||||||||   ||| | |||||||||||    
T  39420283 attcaacttcttgaaagttaaaatattatgttttccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagttagc 39420191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41890076 - 41890034
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41890076 attcaacttcttaaaaattaaaatgttatgttttccaatgcaa 41890034  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 36528418 - 36528514
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatga 97  Q
    |||||||||||||||| || | |||||||||||||||||||||   | ||||||||||||| ||||||||||    ||| ||||||||||| |||||    
T  36528418 attcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggacacaagttaacatga 36528514  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 36278387 - 36278318
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgt 74  Q
    ||||| |||||||||||||| |||| ||||||||| |||  || ||||||||| ||||||||||||||||    
T  36278387 aactttttaaaaattaaaatattatattttccaatacaaagttgctctttttaggttccttaacatgtgt 36278318  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14275826 - 14275898
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| |||| || |||||||||||||||||| ||| ||||||||  ||| ||||| |||||    
T  14275826 attcaacttcttaaaagttaatatattatgttttccaatgcaaaattgctctttttgggttgcttaatatgtg 14275898  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36285036 - 36285108
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| ||||||| |||| |||| |||||||| ||| ||||||||| |||  ||||||||||    
T  36285036 attcaacttcttaaaagttaaaatattatttttttcaatgcaaaattgctctttttatgttgtttaacatgtg 36285108  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2889177 - 2889249
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| | ||||| | || |||| |||| ||| ||| |||||||||| ||||||||||||||    
T  2889177 attcaacttcttaaaagtcaaaatttcatatttttcaatacaaaattcctctttttaaattccttaacatgtg 2889249  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13487789 - 13487721
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||| ||||||| ||||||||| ||||| || |||  | ||||| ||||||||||||||||    
T  13487789 aacttcttaaaagttaaaatattatgtttttcaatgtaaaattgttatttttgagttccttaacatgtg 13487721  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20061145 - 20061073
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| || | || ||||||||| ||||||||  || ||||||||| ||| |||||||||||    
T  20061145 attcaacttcttaaaagttgacatattatgtttttcaatgcaaagttgctctttttaggttgcttaacatgtg 20061073  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15079899 - 15079996
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||| ||||| | | || |||| ||||| || ||| ||||||||| ||| ||||||| ||||  | | ||||||||||| ||||||    
T  15079899 attcaacttcttaaaagttaaactatcatatttttcaatgtaaaattgctctttttaggtttcttaacacgtgtccttaggacacaagttaacatgac 15079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32294600 - 32294503
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    ||||||||||| |||| | ||| | ||||||||||||||| ||  || ||||||||| |||| ||||||||||   | | | ||||||||||||||||    
T  32294600 attcaacttctgaaaagtcaaactattatgttttccaatgtaaatttgctctttttaggttctttaacatgtgcctttagggcacaagttagcatgac 32294503  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 40443915 - 40443959
Alignment:
Q  101 tatatttataaagaacaaaagtatatttaacccttaaaaatatta 145  Q
    |||||||||| ||| |||||  |||||||||||||||||||||||    
T  40443915 tatatttatagagaccaaaaacatatttaacccttaaaaatatta 40443959  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 564196 - 564129
Alignment:
Q  6 acttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    ||||||||||||||||||||||||||||| ||||||||  || |||||||||| ||||||||||||||    
T  564196 acttcttaaaaattaaaatgttatgttttgcaatgcaaagttgctctttttaaattccttaacatgtg 564129  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29508735 - 29508807
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| || |||| |||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  29508735 attcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtg 29508807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24744019 - 24744061
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaa 43  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  24744019 attcaacttctttaaaattaaaatgttatgttttccaatgcaa 24744061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50297727 - 50297630
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||| ||   || || ||||||||||||||| ||||||||||||  ||| |||||||||||   ||| | ||||||||| ||||||    
T  50297727 attcaacttcttaaaagttgtcatattgtgttttccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgac 50297630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 54997762 - 54997693
Alignment:
Q  31 ttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactc 100  Q
    ||||||||||||| ||| ||||||||| ||| |||||||||||   ||| ||||||||||| ||||||||    
T  54997762 ttttccaatgcaaaattgctctttttaggttgcttaacatgtgccctaatgacacaagttaacatgactc 54997693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 18994620 - 18994572
Alignment:
Q  63 cttaacatgtgtaataacgacacaagttagcatgactctatatttataa 111  Q
    |||||||||||| |||| |||||||||||||||||| ||||| ||||||    
T  18994620 cttaacatgtgtcataaagacacaagttagcatgaccctatacttataa 18994572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 27918422 - 27918354
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||| ||||||| |||| |||| |||||||| ||| ||||||||   ||||||||||||||    
T  27918422 aacttcttaaaagttaaaatattatatttttcaatgcaaaattgctctttttggattccttaacatgtg 27918354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 30033556 - 30033468
Alignment:
Q  19 taaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactctatattt 107  Q
    |||||| ||||||||||||||||||  || |||||||| ||||||||||||| ||   | | | ||||||||| |||||| ||||||||    
T  30033556 taaaatattatgttttccaatgcaaagttgctctttttgagttccttaacatatgcctttagggcacaagttaacatgaccctatattt 30033468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36989904 - 36989976
Alignment:
Q  1 attcaacttcttaaaaatt-aaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    |||||||||||||||| || ||||| ||||||||||||||||||  || | |||||||  |||||||||||||    
T  36989904 attcaacttcttaaaagttcaaaatattatgttttccaatgcaaagttgcactttttagattccttaacatgt 36989976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20537393 - 20537346
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatatta 48  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| ||||    
T  20537393 attcaacttcttagaaattaaaatattatgttttccaatacaaaatta 20537346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45249980 - 45249943
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaa 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  45249980 attcaacttcttaaaatttaaaatattatgttttccaa 45249943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24940701 - 24940773
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| |||| || ||||||||| ||||||||  || ||||||||   || |||||||||||    
T  24940701 attcaacttcttaaaagttaatatattatgtttttcaatgcaaacttgctctttttggattgcttaacatgtg 24940773  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 40311766 - 40311730
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaat 39  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  40311766 tcaatttcttaaaaattaaaatattatgttttccaat 40311730  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 40321842 - 40321806
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaat 39  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  40321842 tcaatttcttaaaaattaaaatattatgttttccaat 40321806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 2987458 - 2987372
Alignment:
Q  11 ttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatga 97  Q
    |||||| || |||||||||||||||||||||||  ||||||||||||| |||| |||||||||| |||| | ||||||||| |||||    
T  2987458 ttaaaagttgaaatgttatgttttccaatgcaaagttactctttttaaattccgtaacatgtgttataagggcacaagttaacatga 2987372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40044891 - 40044793
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgact 99  Q
    ||||||||||||||||||||||||  ||||||||||||  ||| ||| ||||||||  |||||||||||||||   | |||||||||||||| ||||||    
T  40044891 attcaacttcttaaaaattaaaattgtatgttttccaacacaaaattgctctttttgggttccttaacatgtgcccttacgacacaagttagtatgact 40044793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 12212265 - 12212174
Alignment:
Q  11 ttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactcta 102  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||| ||||| |||||| |||| || | |||| |||||| ||||||||||    
T  12212265 ttaaaaattaaaatattatgtttttcaatgcaaagttactctttttgagttctttaacacgtgtcattaggacataagttaacatgactcta 12212174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 8221938 - 8221874
Alignment:
Q  27 tatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagtta 91  Q
    ||||||||||||| ||| ||||||| |||||||||| ||||||||||   ||| |||||||||||    
T  8221938 tatgttttccaatccaaaattactccttttaagttcgttaacatgtgccctaaagacacaagtta 8221874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 43340350 - 43340405
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactcttttt 56  Q
    |||||||||||||||| |||| || ||||||||||||||||||  || ||||||||    
T  43340350 attcaacttcttaaaagttaatatattatgttttccaatgcaaagttgctcttttt 43340405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 599 - 530
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||| |||| |||||||    
T  599 attcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctttaacat 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7774667 - 7774736
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||| |||| |||||||    
T  7774667 attcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctttaacat 7774736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7791314 - 7791383
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||| |||| |||||||    
T  7791314 attcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctttaacat 7791383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7811898 - 7811967
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||| |||| |||||||    
T  7811898 attcaacttcttaaacattaaaatgttatgttttccaatgtaaaattactcattttaggttctttaacat 7811967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8867253 - 8867353
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactc 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||   |||| ||||||||||  || | | ||||||||||||||||||    
T  8867253 attcaacttcttaaaaattaaaatgttatgttttctaatgtaatgttact-ttttagcgttctttaacatgtgccattagggcacaagttagcatgactc 8867351  T
Q  101 ta 102  Q
    ||    
T  8867352 ta 8867353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 13933129 - 13933038
Alignment:
Q  11 ttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactcta 102  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||| ||||| |||||| |||| || | |||| |||||| ||||||||||    
T  13933129 ttaaaaattaaaatattatgtttttcaatgcaaagttactctttttgagttctttaacacgtgtcattaggacataagttaacatgactcta 13933038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 21372514 - 21372585
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||  |||||||||| | ||| ||||||||||    
T  21372514 attcaactttttaaaagttaaagtgttatgttttccaatgcaaatttactcttttcaggtttcttaacatgt 21372585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6530377 - 6530474
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||| | || || ||||||||||||||||||  || ||||||||  ||| ||||||||||||  | | ||||||||||| ||||||    
T  6530377 attcaacttcttaaaagtcaatatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgac 6530474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39491702 - 39491662
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgc 41  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  39491702 attcaacttctttaaaattaaaatgttatgtttttcaatgc 39491662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 35865205 - 35865276
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgt 74  Q
    ||||||| |||||| ||||||| |||| ||||| |||| || ||||| ||||||| |||| |||||||||||    
T  35865205 tcaactttttaaaagttaaaatattatattttctaatgtaaaattacactttttaggttctttaacatgtgt 35865276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 42685782 - 42685852
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    ||||||||| |||| ||||||| ||||||||| |||||||| ||  || ||||| | ||||||||||||||    
T  42685782 tcaacttctaaaaagttaaaatattatgtttttcaatgcaaaatagctttttttgaattccttaacatgtg 42685852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31313378 - 31313450
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    ||||||||| |||||| || | || ||||||||||||||||||  || |||||||||  || |||||||||||    
T  31313378 attcaactttttaaaagttgacatattatgttttccaatgcaaagttgctctttttagattgcttaacatgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34576759 - 34576831
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgtttt-ccaatgcaatattactctttttaagttccttaacatgt 72  Q
    ||||||||||||||||||||| || ||||||||| |||||| ||  || ||||||||| ||| ||| ||||||    
T  34576759 attcaacttcttaaaaattaacatattatgttttcccaatgtaaatttgctctttttaggttgctttacatgt 34576831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 39430333 - 39430433
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgactcta 102  Q
    ||||||||| |||| ||||||| ||||||||||||||||||  || |||||||| ||||||||||||| |||  | | ||||||||||| |||||| |||    
T  39430333 tcaacttctaaaaagttaaaatattatgttttccaatgcaaagttgctctttttgagttccttaacatatgtccttaggacacaagttaacatgacccta 39430432  T
Q  103 t 103  Q
    |    
T  39430433 t 39430433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47006667 - 47006738
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    |||||||||||||||| ||||||||||||||||||||||||||  || || |||||  ||||||||||||||    
T  47006667 attcaacttcttaaaatttaaaatgttatgttttccaatgcaaagttgctttttttgggttccttaacatgt 47006738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18030059 - 18030131
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||| ||||||||| | ||||| |||| |||||||||||||  |||||||||||| |||||||||||||||    
T  18030059 attcaatttcttaaaagtcaaaatattatattttccaatgcaaagttactctttttaggttccttaacatgtg 18030131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13637961 - 13638033
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||| ||||||||||||||||||||||||||||||| | || |||  | |||||| |||| ||||||||||    
T  13637961 attcaaattcttaaaaattaaaatgttatgttttccaacgtaaaattgttttttttaggttctttaacatgtg 13638033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 53459684 - 53459734
Alignment:
Q  23 atgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  53459684 atgttatgttttccaatgcaaagttactcattttaagttctttaacatgtg 53459734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 51325558 - 51325490
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgt 74  Q
    ||||||||||||||||||||||||| | ||||||| |||  ||| | ||||||||||| |||||||||||    
T  51325558 aacttcttaaaaattaaaatgttatatattccaatacaaagtta-tttttttaagttcattaacatgtgt 51325490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33791550 - 33791605
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactcttttt 56  Q
    ||||||||| |||||| ||||||| ||||||||||||||| ||  |||||||||||    
T  33791550 attcaactttttaaaagttaaaatattatgttttccaatgtaaagttactcttttt 33791605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 4539929 - 4539999
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||| ||||| | | ||||||| |||||||| |||  || |||| ||||||||||||||||    
T  4539929 tcaacttcttaaaagttaaattatcatgtttttcaatgcaaaattgttcattttgagttccttaacatgtg 4539999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 39905494 - 39905456
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaa 43  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  39905494 aacttcttaaaaattgatatgttatgttttccaatgcaa 39905456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45628382 - 45628479
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||| || ||| |||||||||||||||||||| | |||||   || || |||||| ||||||||| |||||   | | ||||||||||||||||||    
T  45628382 attcaattttttagaaattaaaatgttatgtttttcgatgcagagttgctttttttaggttccttaatatgtgcccttaggacacaagttagcatgac 45628479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 52859607 - 52859539
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatg 71  Q
    |||||||||||||| ||||| | | ||||||||| |||||| |||  || |||| ||||||||||||||    
T  52859607 tcaacttcttaaaagttaaactatcatgttttccgatgcaaaattgttcattttgagttccttaacatg 52859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12478 - 12534
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactcttttta 57  Q
    ||||||||||||||||| |||||||| ||||||||||||||||  ||||||||||||    
T  12478 attcaacttcttaaaaactaaaatgtcatgttttccaatgcaaagttactcttttta 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13134 - 13063
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    ||||||||||||||||||||| |  |||||||||| ||||||| ||| ||||||||  ||||||||||||||    
T  13134 attcaacttcttaaaaattaacaaattatgttttcaaatgcaaaattgctctttttgcgttccttaacatgt 13063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5849990 - 5850061
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    ||||||||||||||||||||| |  |||||||||| ||||||| ||| ||||||||  ||||||||||||||    
T  5849990 attcaacttcttaaaaattaacaaattatgttttcaaatgcaaaattgctctttttgcgttccttaacatgt 5850061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2831429 - 2831463
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2831429 attcaacttcttaaaaattaaaatgttatgttttc 2831463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1065659 - 1065731
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    ||||||||| |||||| ||||| | |||| |||||||||  || |||| ||||||| ||||||||||||||||    
T  1065659 attcaacttattaaaagttaaactattatattttccaatataaaattattctttttgagttccttaacatgtg 1065731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 30249217 - 30249275
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagtt 61  Q
    |||||||||||||| ||||||| ||||||||| ||||||||  |||||| |||| ||||    
T  30249217 tcaacttcttaaaagttaaaatattatgtttttcaatgcaaagttactcgttttgagtt 30249275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 30438402 - 30438357
Alignment:
Q  50 tctttttaagttccttaacatgtgtaataacgacacaagttagcat 95  Q
    |||||||| ||||||||||||||||| | | |||||||||||||||    
T  30438402 tctttttaggttccttaacatgtgtacttaggacacaagttagcat 30438357  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 26081061 - 26080991
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||| ||||||| ||||||||| |||||||| |||  |||||||  |||||||||||||||    
T  26081061 tcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgttctttttgggttccttaacatgtg 26080991  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 26104848 - 26104778
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||| ||||||| ||||||||| |||||||| |||  |||||||  |||||||||||||||    
T  26104848 tcaacttcttaaaagttaaaatattatgttttacaatgcaaaattgttctttttgggttccttaacatgtg 26104778  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32786861 - 32786958
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||| ||||||| |||||||||||||| |||  || |||||||   |||||||||||||||   | | | ||||||||||||||||    
T  32786861 attcaacttcttaaaagttaaaatattatgttttccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgac 32786958  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7907524 - 7907620
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||||||   || || | ||||||||||||| |||||| |||||| ||| |||||||||||   ||| | ||||||||| ||||||    
T  7907524 attcaacttcttaaaaattgttatattgtattttccaatgcaaaattact-tttttaggttgcttaacatgtgccttaagggcacaagttaacatgac 7907620  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 28337277 - 28337346
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgt 72  Q
    |||||||||||||| |||||||  ||| |||| ||||||||  || |||||||||  |||||||||||||    
T  28337277 tcaacttcttaaaagttaaaatactatatttttcaatgcaaagttgctctttttagattccttaacatgt 28337346  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 47991029 - 47990964
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    |||| ||||||| ||||| | | ||||||||||||||||  |||||| ||||| ||||||||||||    
T  47991029 aactccttaaaagttaaattatcatgttttccaatgcaaagttactcattttaggttccttaacat 47990964  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8644776 - 8644734
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaa 43  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  8644776 attcaacttcttaaaaattaaaatgttatattttccaatgcaa 8644734  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31635512 - 31635584
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||||| ||||||| |||||||||| | ||| | |||  |||||||| |||||||||||||||    
T  31635512 attcaacttcttaaaagttaaaatattatgttttctagtgctaaattgttctttttaggttccttaacatgtg 31635584  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 11018030 - 11017960
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    |||||||||||||| ||||| | | ||||||||||||||||  || ||| ||||| |||||||||||||||    
T  11018030 tcaacttcttaaaagttaaattatcatgttttccaatgcaaagttgctcattttaggttccttaacatgtg 11017960  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11420884 - 11420953
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    |||||||||||||| | | |||||||||||||||| ||| ||| |||||| ||||||| ||| |||||||    
T  11420884 attcaacttcttaatagtaaaaatgttatgttttctaattcaaaattactatttttaacttctttaacat 11420953  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5799829 - 5799732
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgtaataacgacacaagttagcatgac 98  Q
    |||||||||||||||  || | || ||| ||||| |||||||| | | ||||||||| |||  ||||||||||  |||| | ||||||||||||||||    
T  5799829 attcaacttcttaaaggttgacatattacgtttttcaatgcaaaactgctctttttaggttgtttaacatgtgccataagggcacaagttagcatgac 5799732  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 14758782 - 14758835
Alignment:
Q  3 tcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactcttttt 56  Q
    |||||||||||||| ||||||| |||||||||||||| |||  || ||||||||    
T  14758782 tcaacttcttaaaagttaaaatattatgttttccaatacaaagttgctcttttt 14758835  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31262630 - 31262703
Alignment:
Q  1 attcaacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtgt 74  Q
    |||||||||||||||| || | || |||||||||||||||||| |||  | |||||| |||  |||||||||||    
T  31262630 attcaacttcttaaaagttgacatattatgttttccaatgcaaaattgttttttttaggttgtttaacatgtgt 31262703  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 31866826 - 31866785
Alignment:
Q  101 tatatttataaagaacaaaagtatatttaacccttaaaaata 142  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  31866826 tatatttataaataacaaaaacatatttaacccttaaaaata 31866785  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 25366810 - 25366878
Alignment:
Q  5 aacttcttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacatgtg 73  Q
    ||||| |||||| ||||| | |||||||| |||||  ||  |||||||||||||||| |||||||||||    
T  25366810 aactttttaaaagttaaactattatgtttcccaatataaatttactctttttaagtttcttaacatgtg 25366878  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 26952093 - 26952033
Alignment:
Q  10 cttaaaaattaaaatgttatgttttccaatgcaatattactctttttaagttccttaacat 70  Q
    |||||||  |||||| |||||||||||||| |||  |||||||||||| ||| ||||||||    
T  26952093 cttaaaagctaaaatattatgttttccaatacaaagttactctttttatgtttcttaacat 26952033  T

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