View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_high_20 (Length: 318)
Name: NF11747_high_20
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 47339596 - 47339307
Alignment:
| Q |
18 |
cttaagagcattagctatagcaattgctccttcgtcttccaagttcaggaagctcaggtatatctcttttaactctgcattcttggcaagagctttactc |
117 |
Q |
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| T |
47339596 |
cttaagagcattagctatagcaattgctccttcgtcttccaagttcaggaagctcaggtatatctctcttaactctgcattcttggcaagagctttactc |
47339497 |
T |
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| Q |
118 |
agagaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaattccccaaagcatcagataaggcaacgccacctt |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
47339496 |
agggaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaatcccccaaagcatcagataaggcaactccacctt |
47339397 |
T |
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| Q |
218 |
catcgcctatccttgtggaggaacaacgaaaatcctccaagcaagaagaacacttcacaacctcagctatagcacgtgctccttcatctc |
307 |
Q |
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| T |
47339396 |
catcgcctatccttgtggaggaacaacgaaaatcctccaagcaagaagaacgcttcacaacctcagctatagcacgtgctccttcatctc |
47339307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 32062017 - 32061944
Alignment:
| Q |
110 |
ctttactcagagaaaccccaccctctacacctaacatgttgtctcgcaaatcaagcttcctcaaatgggtgcaa |
183 |
Q |
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||||||| |||| ||| ||| | || ||||| ||||||||||| ||||||||||||||| ||||||| |||||| |
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| T |
32062017 |
ctttacttagagcaactccagcttccacaccaaacatgttgtcacgcaaatcaagcttcttcaaatgcgtgcaa |
32061944 |
T |
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