View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_high_31 (Length: 240)
Name: NF11747_high_31
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 4260679 - 4260869
Alignment:
| Q |
24 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260679 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
4260778 |
T |
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| Q |
124 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttatt |
214 |
Q |
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| T |
4260779 |
gcaggaatcgtttagaaccaacgactcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttatt |
4260869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 4255794 - 4255597
Alignment:
| Q |
24 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
123 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| |||||||||| |
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| T |
4255794 |
ttgtcaacatttgtggcatctattgcttatgcattggtatgtagaatgaaagccgagaaaattgagaacaagaatgctttgatgggtttaaatatcgatt |
4255695 |
T |
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| Q |
124 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaa |
221 |
Q |
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| T |
4255694 |
gcaggaatcgtttaggagcacctactcctgcaacatattttggaaattgtattggaacatgacttgaaattgttaaaacaggtgagttattgggggaa |
4255597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 4298061 - 4297903
Alignment:
| Q |
56 |
attggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgcaggaatcgtttagaaccaccgactccttca |
155 |
Q |
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| T |
4298061 |
attggtatgtagaatgaaagccgagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgtcggactcgtttagatcagccaattcctgca |
4297962 |
T |
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| Q |
156 |
acatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttatt |
214 |
Q |
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| T |
4297961 |
acatattttggaaattgtattggaggaagacttgcaattgttaaaacaagtgagttatt |
4297903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 4289497 - 4289301
Alignment:
| Q |
25 |
tgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattg |
124 |
Q |
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| T |
4289497 |
tgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaagcagaagaaattgagaacaaaaatgctatgatggttttgaatattgattg |
4289398 |
T |
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| Q |
125 |
caggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaa |
221 |
Q |
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| T |
4289397 |
tcgtaatcgtttagatcagccgattcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaaatgagttattgggggaa |
4289301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 4284799 - 4284605
Alignment:
| Q |
24 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
123 |
Q |
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|||||||| ||||| ||||| || |||||||| | ||||| ||||||||||| | |||||||||||||||||| | |||||| ||||||||| |||| |
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| T |
4284799 |
ttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctaaagaaattgagaacaaaaatgctctgatggctttgaatattgatt |
4284700 |
T |
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| Q |
124 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggg |
218 |
Q |
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| T |
4284699 |
gtcggaattgtttagaaccaccgactcctgcaacatattttggaaattgtattggaggaagacttgcaattgttgaaacaagtgagttattgggg |
4284605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 4266226 - 4266422
Alignment:
| Q |
25 |
tgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattg |
124 |
Q |
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||||||| ||||| |||||||| |||||||||| |||||| ||| ||||| |||| |||||||||||||||||| | |||||| ||||||||| ||||| |
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| T |
4266226 |
tgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaaacagaagaaattgagaacaaaaatgctatgatggttttgaatattgattg |
4266325 |
T |
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| Q |
125 |
caggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaa |
221 |
Q |
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| ||||||||||| | |||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |
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| T |
4266326 |
tcgtaatcgtttagatcagccgattcctgcaacatattttggaaattgtattggaggaaaacttgcaattgttaaaacaaatgagttattgggggaa |
4266422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 4257989 - 4257868
Alignment:
| Q |
94 |
aaaatgttgtgatgggtttgaatatcgattgcaggaa-tcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaa |
192 |
Q |
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| T |
4257989 |
aaaatgttgtgatgggtttgactatcgattgcaggaaatcgtttagaacaaccgactcctgcaacatattttggaaattgtattggagcaagacttgcaa |
4257890 |
T |
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| Q |
193 |
ttgttaaaacaagtgagttatt |
214 |
Q |
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| T |
4257889 |
ttgttaaaacaaatgagttatt |
4257868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 4258388 - 4258319
Alignment:
| Q |
26 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaa |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
4258388 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagactgaaagcagaaaaacttgagaacaaa |
4258319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 4259465 - 4259553
Alignment:
| Q |
35 |
tgtggtatctattgcttatgcattggtatgta-------gaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaat |
116 |
Q |
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| T |
4259465 |
tgtggtatctattgcttatgcattggtatttactatttagaatgaaagcagagaaaattgagaacaaaaaagttgtgtcgggtttgaat |
4259553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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