View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_high_5 (Length: 546)
Name: NF11747_high_5
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 51160673 - 51160138
Alignment:
| Q |
1 |
ttttgtagttttcactttatctctttgttgctttgatcttcgtgtgccatatgcctagctagttttgtttaggttacactatatcaattctgttagtatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
51160673 |
ttttgtagttttcactttatctctttgttgctttgatcttcgtgtgccatatgcctagctaattttgtttaggttacactatatcaattctgttcgtatt |
51160574 |
T |
|
| Q |
101 |
taggaattagttaataatttcttaggagttagttactcaattagtcggtgcaattgaaccctttaaataggacaattatgtaaacagtttattctattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51160573 |
taggaattagttaataatttcttaggagttagttactcaattagtcggtgcaattgaaccctttaaataggacaattatgtaaacagtttattctattac |
51160474 |
T |
|
| Q |
201 |
aaaaatgattcaagctttctctattgaatcctagagtgaaaataatctaggcttgagagaaagggaatgattggagcaactcacatactcataactcaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51160473 |
aaaaatgattcaagctttctctattgaatcctagagtgaaaataatcgaggcttgagagaaagggaatgattggagcaactcacatactcataactcaac |
51160374 |
T |
|
| Q |
301 |
tcatcatgttcacattcctacacacacaaataaaatgaaaccttgatagggactaaagtgtccaagcatcttattttacaacaactattgatgcgaaagg |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51160373 |
tcatcatgttcacaatcctacacacacaaataaaatgaaaccttgatagggactaaagtgtccaagcatcttattttacaacaactattgatgcgaaagg |
51160274 |
T |
|
| Q |
401 |
gatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagcaacgcttcatgttttcctttctctgctatcaca |
500 |
Q |
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| T |
51160273 |
gatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagcaacgcttcatgttttcctttctctgctatcaca |
51160174 |
T |
|
| Q |
501 |
ccattcttaactactgctattaaatctgcacctttg |
536 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
51160173 |
ccattcttaactactgctattaaatctgcacctttg |
51160138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 368 - 536
Target Start/End: Complemental strand, 51149443 - 51149275
Alignment:
| Q |
368 |
atcttattttacaacaactattgatgcgaaagggatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagc |
467 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
51149443 |
atcttattttacaacaacaattgatgccaaagggatctaagatgtagaatcacttgtatgtaatgctactaaagaagcatagtcaccacccttatggagc |
51149344 |
T |
|
| Q |
468 |
aacgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttg |
536 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51149343 |
aatgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttg |
51149275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 404 - 536
Target Start/End: Complemental strand, 51202969 - 51202837
Alignment:
| Q |
404 |
ctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagcaacgcttcatgttttcctttctctgctatcacacca |
503 |
Q |
| |
|
||||||||||||||||||| | || | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51202969 |
ctaagatgtagaagcacttgtgtgtaatgctactaaagaagcatagtcaccacccttatggagcaatgcttcatgttttcctttctctgctatcacacca |
51202870 |
T |
|
| Q |
504 |
ttcttaactactgctattaaatctgcacctttg |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
51202869 |
ttcttaactactgctattaaatctgcacctttg |
51202837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 393 - 532
Target Start/End: Original strand, 29933748 - 29933887
Alignment:
| Q |
393 |
gcgaaagggatctaagatgtagaagcacttttatgcagtgctactaaagaagcatagtcaccgcccttatggagcaacgcttcatgttttcctttctctg |
492 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | || | |||| ||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||| |
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| T |
29933748 |
gcgaaaaggatctaagatgtagaagcacttgtgtgtaatgctgctaaagaagcatagtcaccacccttatgtagcaatgcctcatgttttcctttctctg |
29933847 |
T |
|
| Q |
493 |
ctatcacaccattcttaactactgctattaaatctgcacc |
532 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |
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| T |
29933848 |
atatcacaccattcttaacgactgcaattaaatctgcacc |
29933887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 5630688 - 5630743
Alignment:
| Q |
207 |
gattcaagctttctctattgaatcctagagtgaaaataatctaggcttgagagaaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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|
| T |
5630688 |
gattcaagctttctctattgaatcctagagtgaaaatcattgagggttgagagaaa |
5630743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 9960643 - 9960600
Alignment:
| Q |
222 |
tattgaatcctagagtgaaaataatctaggcttgagagaaaggg |
265 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||| |
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| T |
9960643 |
tattgaatcctagggtgaaaataatcaagggttgagagaaaggg |
9960600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 49733894 - 49733985
Alignment:
| Q |
426 |
tgcagtgctactaaagaagcatagtcaccgcccttatggagcaacgcttcatgttttcctttctctgctatcacaccattcttaactactgc |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||| | |||||||| |||||| |||||||||||| | ||||| ||||| ||||| ||||| |
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| T |
49733894 |
tgcagtgctactaaagaagcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgc |
49733985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 31417103 - 31417138
Alignment:
| Q |
208 |
attcaagctttctctattgaatcctagagtgaaaat |
243 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
31417103 |
attcaagctttctctattgaatcatagagtgaaaat |
31417138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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