View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_high_8 (Length: 467)
Name: NF11747_high_8
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 2133840 - 2133398
Alignment:
| Q |
17 |
acttttgagccatatttttctgatttaacatgcttctggccggattgcacttgagtgatagtgtcacatgacattggtcgattcaaatgtgatacgtgaa |
116 |
Q |
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| T |
2133840 |
acttttgagccatatttttctgatttaacatgcttctggccggattgcacttgagtgatagtgtcacatgacattggtcgattcaaatgtgatacgtgaa |
2133741 |
T |
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| Q |
117 |
aatacaannnnnnnaaacacaaaaatatgtaaaagagatagnnnnnnnntagttgaattgatttatgtatcacaattagattgaccagtatcagtatcaa |
216 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2133740 |
gatacaatttttt-aaacacaaaaatatgtaaaagagatagaaaaaaaatagttgaattgatttatgtatcacaattagattgactagtatcagtatcaa |
2133642 |
T |
|
| Q |
217 |
catcattccatcttaatggtacacaagtggagtcagtcagggacggacccacactcatagtagtg--taggtcctgacccttgctttgattttaaatttt |
314 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
2133641 |
catcattccatcttaatggtacacaagtggagtcaatcagggacggacccacacttatagtagtgtataggtcatgacccttgctttgattttaaatttc |
2133542 |
T |
|
| Q |
315 |
taaagatcatttctcnnnnnnnttattcgagttagaacttctccgatgggagagtccctcgactttaagactcggtgtctcttagatacccctattgaag |
414 |
Q |
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|||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| || |
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| T |
2133541 |
taaagaccatttctcaaaaaaattattcgagttagaccttctccgatgggagagtcccttgactttaagacttggtgtctgttagatacccctattggag |
2133442 |
T |
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| Q |
415 |
aaacataattttgcacaatgtctcaaataggtaccatctctctg |
458 |
Q |
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| T |
2133441 |
aaacataattttgcacaaggtctcaaataggtaccatctctctg |
2133398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 47376319 - 47376276
Alignment:
| Q |
166 |
tagttgaattgatttatgtatcacaattagattgaccagtatca |
209 |
Q |
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| T |
47376319 |
tagttgaatcgatttatgtgtcacaattagattgatcagtatca |
47376276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 31368211 - 31368243
Alignment:
| Q |
166 |
tagttgaattgatttatgtatcacaattagatt |
198 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
31368211 |
tagttgaatggatttatgtatcacaattagatt |
31368243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 33107198 - 33107235
Alignment:
| Q |
166 |
tagttgaattgatttatgtatcacaattagattgacca |
203 |
Q |
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|||||||||||| |||||||| |||||||||||||||| |
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| T |
33107198 |
tagttgaattgacttatgtattacaattagattgacca |
33107235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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