View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_11 (Length: 441)
Name: NF11747_low_11
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 422
Target Start/End: Complemental strand, 43852815 - 43852432
Alignment:
| Q |
11 |
agcagagactaaattggtttgcatggtcttcaatttcaaggactaaaatattatctataaatttataaattaaattgaccaacgactacaattttaatta |
110 |
Q |
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| T |
43852815 |
agcaaagactaaattggtttgcatggtcttcaatttcaaggagtaaaatattatctataaatttataaattaaattgaccaacgactacaattttaatta |
43852716 |
T |
|
| Q |
111 |
ataataccattgtggtgactcactctatacaaatatcttcaaatttaccctaccagcctaccccaaaaacctctatctcatcccatgcatgcacagctat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43852715 |
ataataccattgtggtgactcactctatacaaatatcttcaaatttaccctacc--------ccaaaaacctctatctcatcccatgcatgcacagctat |
43852624 |
T |
|
| Q |
211 |
ttataccaagctttctcacctctccttcaacatcaatcctcccaagtcccatgaccatctttcttttgcattcttccacaacctttgttttcattccctg |
310 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
43852623 |
ttataccaagctttctaacctctcct--------------cccaagtcccat------ctttcttttgcattcttccacaacctttgttttcattccttg |
43852544 |
T |
|
| Q |
311 |
cctttacataatgggtttaccttcatcctcattagaaacaaattggtggatgtttacacttccacccatagcacttaacaatctcctcttggtaatccta |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43852543 |
cctttacataatgggtttaccgtcatcctcattagaaacaaattggtggatgtttacacttccacccatagcacttaacaatctcctcttggtaatccta |
43852444 |
T |
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