View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_13 (Length: 403)
Name: NF11747_low_13
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 45178298 - 45178074
Alignment:
| Q |
19 |
acacaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaa-gctaacttatacttccttgtcacaaactgtcattttgcattagt |
117 |
Q |
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| T |
45178298 |
acacaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactgtcattttgtattagt |
45178199 |
T |
|
| Q |
118 |
gccgtagttctgcattgggaggtatttttgagcgtaccgaaacgcattgatattatta---------ttatgaaacaaagatgaacagtcacggca-ttt |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |
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| T |
45178198 |
gccgtagttctgcattaggaggtatttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagtcacggcatttt |
45178099 |
T |
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| Q |
208 |
ccttttccccctttgtttgtgttga |
232 |
Q |
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||||||||||||||||||||||||| |
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| T |
45178098 |
ccttttccccctttgtttgtgttga |
45178074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 45177906 - 45177843
Alignment:
| Q |
333 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
396 |
Q |
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| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
45177843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
299 |
aacttgctaaaatgcacattttggtattggcaaaagca |
336 |
Q |
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| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
241 |
aaagtgtgatttatttttataggaccaaaaat |
272 |
Q |
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| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
241 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
281 |
Q |
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| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
241 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
285 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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