View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_17 (Length: 337)
Name: NF11747_low_17
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 49922983 - 49923298
Alignment:
| Q |
18 |
cattctcaacctgatattaaatcaaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgc |
117 |
Q |
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| T |
49922983 |
cattctcaacctgatgttaaatcaaatcaaagtcacactatcttatactcactgaaaactgcatagtttcacacatggatctggattttctcattcccgt |
49923082 |
T |
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| Q |
118 |
tctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttcttttt |
217 |
Q |
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| T |
49923083 |
tctaagtccatcatggaactctgttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcatttcttttt |
49923182 |
T |
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| Q |
218 |
gcattttacgaatctgggtcaggttgttttactcgtggga-ttttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49923183 |
gcattttacgaatctgggtcaggttgttttactcgtgggatttttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgt |
49923282 |
T |
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| Q |
317 |
tgttctctctgcttct |
332 |
Q |
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||||||||||| |||| |
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| T |
49923283 |
tgttctctctgattct |
49923298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 26778068 - 26777777
Alignment:
| Q |
41 |
aaatcaaagtcacactatcttatactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctg |
140 |
Q |
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| T |
26778068 |
aaatcgaagtcacactatcttatactcactgaaaactgcatagtgtcacacatggatctggattttctcattcacgctctaattccatcatggaactccg |
26777969 |
T |
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| Q |
141 |
ttagtccaaactactcacaacccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcagg |
240 |
Q |
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||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
26777968 |
ttagttcaaactactcacaacccattactttaattcaatcatttattccaattctgtcatcaatttcatatctttttgcatttttcgaatctgggtcagg |
26777869 |
T |
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| Q |
241 |
ttgttttactcgtgggattttttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgttgttctctctgcttct |
332 |
Q |
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||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
26777868 |
ttgctttacttgcgggtttttttacttacttagccattgttggatccattctccctggaaagcttgttcctggtgttgttctctctgattct |
26777777 |
T |
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