View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11747_low_2 (Length: 731)
Name: NF11747_low_2
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 667; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Complemental strand, 32835284 - 32834561
Alignment:
| Q |
1 |
taatgtctctgaatctctatgctaaccttttgatttacgcacaaacatctattatggttaattattgaaattcattttctcatgttcaagaactctatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
32835284 |
taatgtctctgaatctctatgctaaccttttgatttacgcaagaacatctattatagttaattattgaaattcattttctcatgttcaagaactcgatac |
32835185 |
T |
|
| Q |
101 |
aaaatcaaacgaagtttgtcataaagataaattgaagcataattttttcgaactcacagaaacacaacgaattagatacatatacacgtgaacaaattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32835184 |
aaaatcaaacgaagtttgtcataaagataaattgaagcataattttttcgaactcacagaaacacaacgaattagatacatatacacgtgaacaaattta |
32835085 |
T |
|
| Q |
201 |
aataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaattgaagattaattttttcttgagccatgaaacacacaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32835084 |
aataaaattttctagtatattttggtatcaaaactaattctcagaacgtcacataatgaaattgaagattaattttttcttaagccatgaaacacacaga |
32834985 |
T |
|
| Q |
301 |
attaaggacatatactaccagtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32834984 |
attaaggacatatactaccagtatccatcaacaaaagaattggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaat |
32834885 |
T |
|
| Q |
401 |
acatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataa |
500 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
32834884 |
acatataaatcttgaaaattgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatacatagattccatgcatatgataa |
32834785 |
T |
|
| Q |
501 |
gatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaatatttatttatattcacaagtacaaagataaataaatcaaag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32834784 |
gatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaaaatttatttatattcacaagtacaaagataaataaatcaaag |
32834685 |
T |
|
| Q |
601 |
aaagaaagaa----agaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgccccagaggaacgtcttctctctatcttgatgcggt |
696 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32834684 |
aaagaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgccccagaggaacgtcttctctctatcttgatgcggt |
32834585 |
T |
|
| Q |
697 |
ggatcctggttcggtttctgtgct |
720 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32834584 |
ggatcctggttcggtttctgtgct |
32834561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 299 - 716
Target Start/End: Complemental strand, 32841365 - 32840943
Alignment:
| Q |
299 |
gaattaaggacatatactaccagtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32841365 |
gaattaaggacatatactaccagtatccatcaacaaatgaaatggaaaactttctacataattcaattgaaataaattcttgtgatattccaaaaactca |
32841266 |
T |
|
| Q |
399 |
atacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgat |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| || |
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|
| T |
32841265 |
atacatataaatcttgaaagttgaaaccctggtcatagtaaaaatccaaggcatgtataaaaatgaattgaggagcatatatagattgcatgcatacaat |
32841166 |
T |
|
| Q |
499 |
aagatactaactacacagacaaatacattcgataccaacaccattatctttctttaggaatatttatttatattcacaagtacaaagataaataaatcaa |
598 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
32841165 |
aagatactaactacgcagacaaatacattcaataccaacacaattatctttcttgaggagtctttatttatattcacacgtacaaagataaataaatcaa |
32841066 |
T |
|
| Q |
599 |
a-----gaaagaaagaaagaagcataccagtgtaaagatttgggaaatgactagggcgacagtgatgccccagaggaacgtcttctctctatcttgatgc |
693 |
Q |
| |
|
| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
32841065 |
aagaatgaaagaaagaaagacacataccagtgtaaggatttgggaaatgactaaggcgactgtgatgcccctgaggaacgtcttctctctatcttgctgc |
32840966 |
T |
|
| Q |
694 |
ggtggatcctggttcggtttctg |
716 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
32840965 |
ggtggagcctggttcggtttctg |
32840943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 32841636 - 32841372
Alignment:
| Q |
1 |
taatgtctctgaatctctatgctaaccttttgatttacgcacaaacat----ctattatggttaattattgaaattcattttctcatgttcaagaactct |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32841636 |
taatgtatctgaatctctatgctaaccttctgatttatgcacaaacatattactattatagttaattattgaaattcattttctcatgttcaagaactcg |
32841537 |
T |
|
| Q |
97 |
atacaaaatcaaacgaagtttgtcataaagataaattgaagcataattttttcgaactcacagaaacacaacgaattagatacatatacacgtgaacaaa |
196 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
32841536 |
atacagaatcaaaccaagattgtcataaagataaattgaagcaaaaaattttcgaactcatagaaacacgacgaattagatacacatacacatgaacaaa |
32841437 |
T |
|
| Q |
197 |
tttaaataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaa |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
32841436 |
tttaaataaaattttctagtatattttggtatcgaaattaattatcagaacatcacatattgaaa |
32841372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 31661713 - 31661789
Alignment:
| Q |
430 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
31661713 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatatatagattgcatgcacatgataagatact |
31661789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 31683179 - 31683255
Alignment:
| Q |
430 |
gtcatagtaaaaatccaaggcatgtataaaaatgaattaaggaacatatatagattccatgcatatgataagatact |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
31683179 |
gtcatagtgaaaatccaaggcatgtataaaaatgaattgaggaacatgtatagattgcatgcacatgataagatact |
31683255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 31661627 - 31661710
Alignment:
| Q |
320 |
agtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaataca |
403 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
31661627 |
agtatccatcaacaaataaaatggacaactttctaaacccttcaattgaaataaattcttgtgatatttcaaaaactcaataca |
31661710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 31683093 - 31683176
Alignment:
| Q |
320 |
agtatccatcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattccaaaaactcaataca |
403 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
31683093 |
agtatccatcaacaaataaaatggacaactttctaaacccttcaattgaaataaattcttgtgatatttcaaaaactcaataca |
31683176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 194 - 462
Target Start/End: Complemental strand, 7479615 - 7479345
Alignment:
| Q |
194 |
aaatttaaataaaattttctagtatattttggtatcaaaattaattctcagaacgtcacataatgaaattgaagattaa-ttttttcttgagccatgaaa |
292 |
Q |
| |
|
||||| ||||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| || ||||| |
|
|
| T |
7479615 |
aaattgaaataaaatttgctactacattttggtatcgaaattaattctcagaacatcacataatgagatttaagattaacttttttcttaagtaatgaag |
7479516 |
T |
|
| Q |
293 |
cacacagaattaaggacata-tactaccagtatcca--tcaacaaaagaaatggaaaactttctacataattcaattgaaataaattctagtgatattcc |
389 |
Q |
| |
|
|| | |||||||||||||| |||||| || ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
7479515 |
catagtgaattaaggacataatactactag-atccacatcaacaaattatatgaaaaactttctacataattcaattgaaataaattcttgtgaaattcc |
7479417 |
T |
|
| Q |
390 |
aaaaactcaatacatataaatcttgaaagttgaaaccccggtcatagtaaaaatccaaggcatgtataaaaat |
462 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||| ||||||||| |
|
|
| T |
7479416 |
aaaaactcaatacatatatatcttgaaagttgaaa-ctctgtcatagtaaaaatccaaggcaaatataaaaat |
7479345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 7479688 - 7479643
Alignment:
| Q |
235 |
taattctcagaacgtcacataatgaaattgaagattaattttttct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7479688 |
taattctcagaacgtcacataatgaaattgaaaattaattttttct |
7479643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 28403402 - 28403497
Alignment:
| Q |
118 |
gtcataaagataaattgaagcataattttttcgaactcacagaaacacaacgaattagatacatatacacgtgaacaaatttaaataaaattttctagt |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||| ||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
28403402 |
gtcataaaga-aaattgaagcataattttttctaactcatagaaacacaatgaattatgtacatatgcac-tgaacaaa-ttaaataaaattttctagt |
28403497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 19945985 - 19946122
Alignment:
| Q |
4 |
tgtctctgaatctctatgctaaccttttgatttacgcacaaacat----ctattatggttaattattgaaattcattttctcatgttcaagaactctata |
99 |
Q |
| |
|
||||||| | ||| |||||||||||| ||| || |||||||||| ||| ||| ||| |||||| ||| | ||| |||||| ||||||||||| ||| |
|
|
| T |
19945985 |
tgtctctaactctatatgctaaccttctgaaatatgcacaaacataatactactatagttcattattaaaaataattatctcatattcaagaactccata |
19946084 |
T |
|
| Q |
100 |
ca-aaatcaaacgaagtttgtcataaagataaattgaa |
136 |
Q |
| |
|
|| |||||||| |||||||| || |||||||||||||| |
|
|
| T |
19946085 |
cataaatcaaaagaagtttgacaaaaagataaattgaa |
19946122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 19375268 - 19375330
Alignment:
| Q |
119 |
tcataaagataaattgaagcataattttttcgaactcacagaaacacaacgaattagatacata |
182 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||| |||||||||| ||||||| |||||| |
|
|
| T |
19375268 |
tcataaaga-aaattgaagcataattttttctaaatcatagaaacacaatgaattaggtacata |
19375330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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