View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_low_24 (Length: 299)

Name: NF11747_low_24
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_low_24
NF11747_low_24
[»] chr1 (17 HSPs)
chr1 (16-281)||(3300731-3300995)
chr1 (16-278)||(43044997-43045256)
chr1 (16-149)||(43066861-43066994)
chr1 (16-149)||(43083841-43083974)
chr1 (16-140)||(38138019-38138143)
chr1 (16-91)||(43076774-43076849)
chr1 (48-140)||(45983861-45983953)
chr1 (225-281)||(45993512-45993568)
chr1 (225-278)||(43045656-43045709)
chr1 (225-278)||(43066698-43066751)
chr1 (225-278)||(43084084-43084137)
chr1 (225-281)||(45983726-45983782)
chr1 (16-138)||(7891113-7891235)
chr1 (48-138)||(7888848-7888938)
chr1 (87-140)||(50912450-50912503)
chr1 (225-269)||(40034724-40034768)
chr1 (85-140)||(40034852-40034907)
[»] chr4 (2 HSPs)
chr4 (16-152)||(4231462-4231598)
chr4 (221-278)||(4231672-4231729)
[»] chr6 (2 HSPs)
chr6 (16-139)||(7519882-7520005)
chr6 (18-139)||(7529419-7529540)
[»] chr2 (7 HSPs)
chr2 (16-139)||(34690843-34690966)
chr2 (16-139)||(34713255-34713378)
chr2 (16-140)||(16232184-16232308)
chr2 (225-281)||(34691036-34691092)
chr2 (225-281)||(34713448-34713504)
chr2 (16-57)||(33860838-33860879)
chr2 (226-270)||(16232380-16232424)
[»] chr7 (1 HSPs)
chr7 (16-68)||(39242500-39242552)
[»] chr8 (7 HSPs)
chr8 (16-138)||(1846486-1846608)
chr8 (225-281)||(4787480-4787536)
chr8 (16-138)||(4619686-4619808)
chr8 (17-140)||(4297480-4297603)
chr8 (225-278)||(4619893-4619946)
chr8 (17-61)||(4787648-4787692)
chr8 (188-281)||(4297648-4297741)
[»] chr5 (2 HSPs)
chr5 (226-268)||(16349349-16349391)
chr5 (16-105)||(16349144-16349233)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 3300731 - 3300995
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300731 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 3300830  T
Q  116 cttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgcatcttcaaagggct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300831 cttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgcatcttcaaagggct 3300930  T
Q  216 aaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3300931 aaaacgttcaaataccttgttgcagcaa-aaatcatttgcttcacaccaagagtgaaagcaagaag 3300995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 43044997 - 43045256
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  43044997 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43045096  T
Q  116 cttaggtgtagtggcatccatctgttcacgatagcaagacaatgagaatttgta--taaataaagtaatcacagaaataatcaa--atgcatcttcaaag 211  Q
    ||| |||||||| ||||||||||||||| |||||       |||  |||| |||  ||||||||  ||| | | ||||||||||  || || |||||| |    
T  43045097 cttgggtgtagtagcatccatctgttcaagatag-------atgcaaattagtacttaaataaatgaattataaaaataatcaaatatacaacttcaagg 43045189  T
Q  212 ggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    |||| |||   | ||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  43045190 ggctgaaaatattaaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaag 43045256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 43066994 - 43066861
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  43066994 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43066895  T
Q  116 cttaggtgtagtggcatccatctgttcacgatag 149  Q
    ||| |||||||| ||||||||||||||| |||||    
T  43066894 cttgggtgtagtagcatccatctgttcaagatag 43066861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 43083841 - 43083974
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  43083841 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagta 43083940  T
Q  116 cttaggtgtagtggcatccatctgttcacgatag 149  Q
    ||| |||||||| ||||||||||||||| |||||    
T  43083941 cttgggtgtagtagcatccatctgttcaagatag 43083974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 38138143 - 38138019
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| |   ||||| ||| ||||| ||||||||||||||||||||||||| |||| |||||    
T  38138143 cagagatgggaacaaatggaatttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagta 38138044  T
Q  116 cttaggtgtagtggcatccatctgt 140  Q
     || |||||||||||||||||||||    
T  38138043 tttgggtgtagtggcatccatctgt 38138019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 43076849 - 43076774
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaat 91  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43076849 cagagatgggaacaaatggaatgttttctgggttatagccaaccttcttcaaataggatgaaacttcctccacaat 43076774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 45983953 - 45983861
Alignment:
Q  48 ttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 140  Q
    |||||||||||||| |||||| ||| | |||||| | ||||||||||| |||||||| || | ||||| ||||||||||||||||||||||||    
T  45983953 ttatagccaaccttattcaaacagggtaaaacttgcctcacaatttctacatacctatccctagagtatttaggtgtagtggcatccatctgt 45983861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 45993568 - 45993512
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  45993568 aaataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaag 45993512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 43045656 - 43045709
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  43045656 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaag 43045709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 43066751 - 43066698
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  43066751 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaag 43066698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 43084084 - 43084137
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  43084084 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaag 43084137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 45983782 - 45983726
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  45983782 aaataccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaag 45983726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 7891235 - 7891113
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||| || | ||| ||||||||  || |||||||||||||||   ||||| ||| ||||| ||   ||||||||| |||||||||| |||| |||||    
T  7891235 cagagatagggataaaaggaattttacctaggttatagccaacctcactcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagta 7891136  T
Q  116 cttaggtgtagtggcatccatct 138  Q
     || |||||||||||||||||||    
T  7891135 tttgggtgtagtggcatccatct 7891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 7888938 - 7888848
Alignment:
Q  48 ttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatct 138  Q
    |||||||||||||   ||||| ||| ||||||||  ||||||||||||||||||||  |||  |||||  | |||||||||||||||||||    
T  7888938 ttatagccaacctctctcaaaaagggtgaaacttgattcacaatttcttcatacctgtcctaggagtatatgggtgtagtggcatccatct 7888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 50912450 - 50912503
Alignment:
Q  87 acaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 140  Q
    ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||    
T  50912450 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgt 50912503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 40034768 - 40034724
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagt 269  Q
    |||||||||||||||||| || |||||||| ||||||||||||||    
T  40034768 aaataccttgttgcagcagcagatcatttgattcacaccaagagt 40034724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 40034907 - 40034852
Alignment:
Q  85 tcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgt 140  Q
    |||||| ||||||| |||||||||| ||||| || |||||||| ||||||||||||    
T  40034907 tcacaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgt 40034852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 4231462 - 4231598
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||| |||||||| | ||| |||||    
T  4231462 cagagatgggaacaaatggaattttatctgggttatagccaaccttcttcatgtaggatgatacttccttcacaatttcatcatacctgctcttggagta 4231561  T
Q  116 cttaggtgtagtggcatccatctgttcacgatagcaa 152  Q
    ||| || |||||||| |||||||||||| ||||||||    
T  4231562 cttgggagtagtggcgtccatctgttcaagatagcaa 4231598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 4231672 - 4231729
Alignment:
Q  221 gttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  4231672 gttcaaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaag 4231729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 7520005 - 7519882
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||| |||| |||||    
T  7520005 cagagattggaacaaatgggattttgtctgggttgtaaccaaccttcttcaagtaggatgaaacttccttcacgatttcatcgtacctagcctttgagta 7519906  T
Q  116 cttaggtgtagtggcatccatctg 139  Q
    ||| || || || |||||||||||    
T  7519905 cttgggggtggtagcatccatctg 7519882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 7529540 - 7529419
Alignment:
Q  18 gagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtact 117  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||| |||| |||||||    
T  7529540 gagatgggaacaaatgggattttgtcagggttgtaaccaaccttcttcaagtaggatgaaacttccttcacgatttcatcgtacctagcctttgagtact 7529441  T
Q  118 taggtgtagtggcatccatctg 139  Q
    | || || || |||||||||||    
T  7529440 tgggggtggtagcatccatctg 7529419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 34690843 - 34690966
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||| |||| |||||| |||| | || |||||  || ||||| | |||||||||||  |||||||||| |||| |||||    
T  34690843 cagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagta 34690942  T
Q  116 cttaggtgtagtggcatccatctg 139  Q
     || |||||| |||||||||||||    
T  34690943 tttgggtgtaatggcatccatctg 34690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 34713255 - 34713378
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||||||||||||||||||||| |||| |||||| |||| | || |||||  || ||||| | |||||||||||  |||||||||| |||| |||||    
T  34713255 cagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagta 34713354  T
Q  116 cttaggtgtagtggcatccatctg 139  Q
     || |||||| |||||||||||||    
T  34713355 tttgggtgtaatggcatccatctg 34713378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 16232184 - 16232308
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    |||||||||||||||||||||| |  || | |||||| |||| | || |||||  || ||||||| ||||||||||| ||||||| ||  |||| |||||    
T  16232184 cagagatgggaacaaatggaatatcatcagcgttataaccaatcctcgtcaaagcgggtgaaactcccttcacaattacttcatatctgtccttggagta 16232283  T
Q  116 cttaggtgtagtggcatccatctgt 140  Q
     || ||||||||||||| |||||||    
T  16232284 tttcggtgtagtggcattcatctgt 16232308  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 34691036 - 34691092
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||    
T  34691036 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaag 34691092  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 34713448 - 34713504
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||    
T  34713448 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaag 34713504  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 33860838 - 33860879
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaa 57  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  33860838 cagagatgggaacaaatggaactttgtctaggttatagccaa 33860879  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 16232380 - 16232424
Alignment:
Q  226 aataccttgttgcagcaacaaatcatttgcttcacaccaagagtg 270  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||    
T  16232380 aataccttgttgcagcagcagatcatttgcctcacaccaagagtg 16232424  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 39242552 - 39242500
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaa 68  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  39242552 cagagatgggaacaaatcgagttttgtctgggttatagccaaccttcttcaaa 39242500  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 1846486 - 1846608
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    ||||||| || | ||| ||||||||  ||||||||||||||||||   ||||| ||| ||||| ||   ||||||||| |||||||||| |||| |||||    
T  1846486 cagagatagggataaaaggaattttacctgggttatagccaacctcgctcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagta 1846585  T
Q  116 cttaggtgtagtggcatccatct 138  Q
     || |||||||||||||||||||    
T  1846586 tttgggtgtagtggcatccatct 1846608  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 4787536 - 4787480
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||    
T  4787536 aaataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaag 4787480  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 4619686 - 4619808
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagta 115  Q
    |||||||||||||||||| |||||| |  ||||||||||||| | ||| |||| ||  |||||   | ||||||| |||||||||||||  ||| |||||    
T  4619686 cagagatgggaacaaatgtaatttttttagggttatagccaatcctctccaaaaagtgtgaaaaacctttcacaaattcttcatacctatacttggagta 4619785  T
Q  116 cttaggtgtagtggcatccatct 138  Q
     || |||| ||||||||||||||    
T  4619786 tttgggtgcagtggcatccatct 4619808  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 4297480 - 4297603
Alignment:
Q  17 agagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtac 116  Q
    ||||||||||| |||||||||||  | ||| ||||||||||||||  ||||||||| | |||||| ||     |||| | |||||||| || | |||||     
T  4297480 agagatgggaataaatggaatttcatatggcttatagccaaccttgatcaaataggttaaaacttgctctgatatttttacatacctatccatggagtat 4297579  T
Q  117 ttaggtgtagtggcatccatctgt 140  Q
    || |||||||||||||||||||||    
T  4297580 ttgggtgtagtggcatccatctgt 4297603  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 4619893 - 4619946
Alignment:
Q  225 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaag 278  Q
    ||||||||||||| |||| || |||||||||||||||||||| || ||||||||    
T  4619893 aaataccttgttgtagcagcagatcatttgcttcacaccaagggttaaagcaag 4619946  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 4787692 - 4787648
Alignment:
Q  17 agagatgggaacaaatggaattttgtctgggttatagccaacctt 61  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  4787692 agagatgggaacaaatggaatttcatttgggttatagccaacctt 4787648  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 4297648 - 4297741
Alignment:
Q  188 aaataatcaaatgca-tcttcaaagggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaag 281  Q
    |||||||||||| || |||| || |||||||||  | ||||||||||||||||||| || || ||||| ||| |||||||| |||| ||||||||    
T  4297648 aaataatcaaatacaatcttaaacgggctaaaaa-tacaaataccttgttgcagcagcagataatttgattcgcaccaagattgaaggcaagaag 4297741  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 16349349 - 16349391
Alignment:
Q  226 aataccttgttgcagcaacaaatcatttgcttcacaccaagag 268  Q
    ||||||||||||||||| || ||||||||||| ||||||||||    
T  16349349 aataccttgttgcagcagcagatcatttgcttgacaccaagag 16349391  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 16349144 - 16349233
Alignment:
Q  16 cagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctac 105  Q
    |||||||||||||||||| || || |||| | ||||||||||| ||| |||||   ||||||| ||   |||||||||||||| ||||||    
T  16349144 cagagatgggaacaaatgtaacttcgtcttgtttatagccaacgttcatcaaaattgatgaaagttgactcacaatttcttcaaacctac 16349233  T

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