View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_29 (Length: 258)
Name: NF11747_low_29
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 36326936 - 36327154
Alignment:
| Q |
18 |
cagtcagatgccattacattaatatcatgccattaattacttggatataaattaaatatatgttaaaaaatttaa-aacatgccttttttatgtattctg |
116 |
Q |
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| T |
36326936 |
cagtcagatgccattacattaatatcatgccattaattacttggatataaattaaatatatgttaaaaaaattaagaacatgccttttttatgtattttg |
36327035 |
T |
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| Q |
117 |
ttgtacgataaatatattttatatctataaatccatacactaaacaataacatatagtgtttcttgatttgtatatgttcctacaatagtttatttgctt |
216 |
Q |
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| T |
36327036 |
ttgtacgataaatatattttatatctataaatacat----taaacaataacatatagtgtgtcttgatttgtatatgttcctacaatagtttatttgctt |
36327131 |
T |
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| Q |
217 |
gattttgcaacaaggccagtaca |
239 |
Q |
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| T |
36327132 |
gattttgcaataaggtcagtaca |
36327154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 36304639 - 36304851
Alignment:
| Q |
29 |
cattacattaatatcatgccattaattacttggatataaattaaa-tatatgttaaaaaatttaaaacatgcc----ttttttatgtattctgttgtacg |
123 |
Q |
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| T |
36304639 |
cattacattaatatcatgccattaattacttagatataaattaaaatatgggataaaaaatgtaaaacatgctagctttttttatgtattttgttgtacg |
36304738 |
T |
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| Q |
124 |
ataaatatattttatatctataaatccatacactaaacaataacatatagtgtttcttgatttgtatatgttcctacaatagtttatttgcttgattttg |
223 |
Q |
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| T |
36304739 |
atgaatatattttatatatatctataagtacattaaacaataacatatagtgtgtcttgatttgtatatgttcctacaatagtttatttgcttgattttg |
36304838 |
T |
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| Q |
224 |
caacaaggccagt |
236 |
Q |
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||| ||||||||| |
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| T |
36304839 |
caataaggccagt |
36304851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 36321887 - 36321970
Alignment:
| Q |
157 |
taaacaataacatatagtgtttcttgatttgtatatgttcctacaatagtttatttgcttgattttgcaacaaggccagtacac |
240 |
Q |
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| T |
36321887 |
taaacaataaaatatagtgtgtcttgatttgtatatgttcctacaatagtttatttgcttgattttgcaataaggtcagtacac |
36321970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 36320509 - 36320556
Alignment:
| Q |
21 |
tcagatgccattacattaatatcatgccattaattacttggatataaattaa |
72 |
Q |
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| T |
36320509 |
tcagatgccattacattaatatcatgcc----attacttggatataaattaa |
36320556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 36321615 - 36321683
Alignment:
| Q |
71 |
aaatatatgttaaaaaatttaaaacatgcc--ttttttatgtattctgttgtacgataaatatattttatat |
140 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||| |
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| T |
36321615 |
aaatatacgttaaaaaatttaaaacatgccttttttttatgtatt---ttgtacaatgaatatattttatat |
36321683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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