View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_3 (Length: 638)
Name: NF11747_low_3
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 24 - 556
Target Start/End: Complemental strand, 37191035 - 37190505
Alignment:
| Q |
24 |
ttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagtgcgtcgatttgaaagaactcgcgagg |
123 |
Q |
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| T |
37191035 |
ttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagtgcgtcgatttgaaagaactcgcgagg |
37190936 |
T |
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| Q |
124 |
caaaggttttgcattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcgttttacgtggcggggtggttgggggt |
223 |
Q |
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| T |
37190935 |
caaaggttttgtattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcgttttacgtggcggggtggttgggggt |
37190836 |
T |
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| Q |
224 |
ttggcgactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaatgaatcaagtgaagaagattcgagagttgatgacg |
323 |
Q |
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| T |
37190835 |
ttggctactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaatgaatcaagtgaagaagattcgggagttgatgacg |
37190736 |
T |
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| Q |
324 |
tggtggggatggaacgagggaaagacatgcttcatatgtagcttttcttctattgcttctgccgttaacgttgatcgatacataaaatggaacaa---ca |
420 |
Q |
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| T |
37190735 |
tggtcgggatggaacgagggaaagacatgcttcatatgtagcttttcttctattgcttctgccgttaacgttgatcgatacataaaatggaacaacaaca |
37190636 |
T |
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| Q |
421 |
acgtctcttttgtataatcctaaatgtggatggtccctgacaaccactggtattccctttctggtggaattctgcgtaactatgtagagttgttgtatcg |
520 |
Q |
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| T |
37190635 |
acgtctcttttgtataatcctaaatgtggatggtccctgaca-----tggtattccctttctggtggaattctgcgtaactatgtagagttgttgtatcg |
37190541 |
T |
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| Q |
521 |
agtttttcaggttttattccaaactcaaatgagctt |
556 |
Q |
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| T |
37190540 |
agtttttcaggttttattccaaactcaaatgagctt |
37190505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 13419365 - 13419457
Alignment:
| Q |
72 |
caagcaaacgaggggcaaggtctagtgcgtcgatttgaaagaactcgcgaggcaaaggttttgcattttcgaatgaaatgtgcggttctgatga |
165 |
Q |
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| T |
13419365 |
caagcaaacgaggggcaaggtctggtgcatcgatttgaaataactcgcgtggcaaa-gttttgttttttcgaatgaaatgtgtggttcttatga |
13419457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 610
Target Start/End: Complemental strand, 37190504 - 37190475
Alignment:
| Q |
581 |
atggctaaggatttgtgttatgtgaaatta |
610 |
Q |
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| T |
37190504 |
atggctaaggatttgtgttatgtgaaatta |
37190475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 552
Target Start/End: Complemental strand, 25121403 - 25121332
Alignment:
| Q |
482 |
tggtggaattctgcgtaactatgtagagttgttg-tatcgagtttttcaggttttattccaaactcaaatga |
552 |
Q |
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| T |
25121403 |
tggtggaattctgcgtaaccatacagggttgtttctatcgggtttttcaggttttattccagactcagatga |
25121332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 25121529 - 25121469
Alignment:
| Q |
362 |
tagcttttcttctattgcttctgccgttaacgttgatcgatacataaaatggaacaacaac |
422 |
Q |
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| T |
25121529 |
tagcttttcttctactacttatgttgttacagttgaccgatacataaaatggaacaacaac |
25121469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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