View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11747_low_30 (Length: 246)
Name: NF11747_low_30
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2094863 - 2094630
Alignment:
| Q |
1 |
taaggaatgatccactaaccctttatttaaactccaaatatctccccaagtaaccccatatttgtcttgaaggactctcacccataacccactattgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2094863 |
taaggaatgatccactaaccctttatttaaactccaaatatctccc-aagtatccccatatttgtcttgaaggactctcacccataacccactattgatc |
2094765 |
T |
|
| Q |
101 |
tattttcatcctccacaaccatatttgcttagtaaagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2094764 |
tattttcatcctccacaaccatatttgcatagtaaagcaaaattaaaagctttgatgttcctaatgtctaaccctccatccttcctccttctacaaattt |
2094665 |
T |
|
| Q |
201 |
tatcgcattttacctaatgaattttccctgtctct |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2094664 |
tatcgcattttacctaatgaattttccctgtctct |
2094630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University