View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11747_low_32 (Length: 241)
Name: NF11747_low_32
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_32 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0003 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 329244 - 329470
Alignment:
| Q |
18 |
gtttaaagatcaagt-cacataaactttgaagtcatcatctatatataaacaactaaactttcaaacctttttgtctttgaattctagttgataacac-- |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329244 |
gtttaaagatcaagttcacataaactttgaagtcatcatctatatataaacaactaaactttcaaacctttttgtctttgaattctagttgataacacac |
329343 |
T |
|
| Q |
115 |
acaccccacaaatttttatacaacttatttgtattgctattatccatggtaatagtcttaggacacaaatttgcaaaactctacaacaagctggagaatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329344 |
acaccccacaaatttttatacaacttctttgcattgttattatccatggtaatagtcttaggacacaaatttgcaaaactctacaacaagctggagaatc |
329443 |
T |
|
| Q |
215 |
acaaccaccaccacaaccatcatcatc |
241 |
Q |
| |
|
|||||||| ||||| |||||||||||| |
|
|
| T |
329444 |
acaaccacaaccaccaccatcatcatc |
329470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University