View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_low_37 (Length: 236)

Name: NF11747_low_37
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_low_37
NF11747_low_37
[»] chr4 (5 HSPs)
chr4 (15-221)||(32835274-32835474)
chr4 (15-93)||(31661458-31661536)
chr4 (15-70)||(31682950-31683005)
chr4 (17-70)||(31682563-31682616)
chr4 (55-112)||(32841582-32841639)
[»] chr5 (2 HSPs)
chr5 (31-197)||(28403202-28403385)
chr5 (35-82)||(19375199-19375246)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 32835274 - 32835474
Alignment:
Q  15 cagagacattattgtctatcgaatgcttgaatatgacaggtagtaatgtgtttgtgcataaattagaaggtttacacagagattcagagatattattgaa 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  32835274 cagagacattattgtatatcgaatgcttgaatatgacaggtagtaatgtgtttgtgcataaattagaaggtttacacaga--------gatattattgaa 32835365  T
Q  115 gtttcaaattggctcaagtattttcattattttttccttaatttgttacac--attttgaataattttaaaatatattgcgttgttaatttaacttttag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32835366 gtttcaaattggctcaagtattttcattattttttccttaatttgttacacatattttgaataattttaaaatatattgcgttgttaatttaacttttag 32835465  T
Q  213 ctaattatt 221  Q
    |||||||||    
T  32835466 ctaattatt 32835474  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 31661536 - 31661458
Alignment:
Q  15 cagagacattattgtctatcgaatgcttgaatatgacaggtagtaatgtgtttgtgcataaattagaaggtttacacag 93  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||| ||||| ||||||||| ||||||    
T  31661536 cagagacattattgtctatcaaatgcttgaataagacaagtagtaatgtgcttgtgtataaactagaaggttaacacag 31661458  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 31683005 - 31682950
Alignment:
Q  15 cagagacattattgtctatcgaatgcttgaatatgacaggtagtaatgtgtttgtg 70  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||    
T  31683005 cagagacattattgtctatcaaatgcttgaataagacaagtagtaatgtggttgtg 31682950  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 31682616 - 31682563
Alignment:
Q  17 gagacattattgtctatcgaatgcttgaatatgacaggtagtaatgtgtttgtg 70  Q
    |||||||||||||||||| | |||||| |||||||| ||| |||||| ||||||    
T  31682616 gagacattattgtctatcaagtgcttgcatatgacaagtaataatgtttttgtg 31682563  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 32841582 - 32841639
Alignment:
Q  55 tagtaatgtgtttgtgcataaattagaaggtttacacagagattcagagatattattg 112  Q
    ||||||| ||||||||||||||| ||||||||  || ||||||||||| | |||||||    
T  32841582 tagtaatatgtttgtgcataaatcagaaggttagcatagagattcagatacattattg 32841639  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 28403385 - 28403202
Alignment:
Q  31 tatcgaatgcttgaatatgacaggtagtaatgtgtttgt------------gcataaattagaaggtttacacagagattcagagatattatt---gaag 115  Q
    |||||||||||||||||||||| ||||||||||||||||            | |||||| ||||||||  |||||||||||||||||||| ||   ||||    
T  28403385 tatcgaatgcttgaatatgacaagtagtaatgtgtttgtatgccctgatttgtataaatcagaaggttagcacagagattcagagatattcttgaagaag 28403286  T
Q  116 tttcaaattggctcaagtattttcattattttttccttaatttgttacaca--ttttgaataattttaaaatatattgcgttgt 197  Q
     |||||||||| | || || ||| |||  ||||||||||||||||||||||  ||||| || ||||| || |||||||||||||    
T  28403285 attcaaattggtttaactactttgatttgtttttccttaatttgttacacatgttttgcattattttcaactatattgcgttgt 28403202  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 19375246 - 19375199
Alignment:
Q  35 gaatgcttgaatatgacaggtagtaatgtgtttgtgcataaattagaa 82  Q
    ||||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  19375246 gaatgctcgaatatgacaagtagtaatgcgtttgtgcataaatcagaa 19375199  T

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