View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_38 (Length: 228)
Name: NF11747_low_38
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 2095482 - 2095257
Alignment:
| Q |
7 |
gcagctgcacacaaagtgacgatgtgtggagataaagaaaggtattcatttgcactattttccgtcccaaagaaagatgtgaaaattgaggtgccacatg |
106 |
Q |
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| T |
2095482 |
gcagctgcacacaaagtgacgatgtgtggagataaagaaaggtattcatttgcactattttccgtcccaaagaaagatgtgaaaattgaggtgccacatg |
2095383 |
T |
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| Q |
107 |
aattggtggaggataaaatgcatcctcttcatta-ccggtcattcaattatgatgattacttagactacgtcgtgttaggtctcaaagaaaataaaga-- |
203 |
Q |
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| T |
2095382 |
aattggtggaggataaaatgcatcctcttcattacccggtcattcaattatgatgattacttagactacgtcgtgttaggtctcaaagaaaataaagaga |
2095283 |
T |
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| Q |
204 |
-aattacactagaggcatttttaggt |
228 |
Q |
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| T |
2095282 |
ttattacactagaggcatttttaggt |
2095257 |
T |
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Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 12462533 - 12462693
Alignment:
| Q |
14 |
cacacaaagtgacgatgtgtggagataaagaaaggtattcatttgcactattttccgtcccaaagaaagatgtgaaaattgaggtgccacatgaattggt |
113 |
Q |
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| T |
12462533 |
cacacaaagtgaagatgtttggagataaagaaaggtattcagtaggactactttctaacccaaagaatgatgtgaaaattgaggtgccacatgaattggt |
12462632 |
T |
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| Q |
114 |
ggaggataaaatgcatcctcttcattaccggtcattcaattatgatgattacttagactac |
174 |
Q |
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| T |
12462633 |
ggatcaaaaaatgcatcctcttcgttaccgctcattctattatggggattacttagactac |
12462693 |
T |
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