View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_5 (Length: 616)
Name: NF11747_low_5
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 602
Target Start/End: Original strand, 52730930 - 52731526
Alignment:
| Q |
14 |
agaactgcaagagaaagttgaaagtaatagctggcctctccttcctgaacnnnnnnnnnn--------tggaaactaatcaaatttgcaattaacatatt |
105 |
Q |
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| T |
52730930 |
agaactgcaagagaaagttgaaagtaatagctggcctctccttcctgaacaagaataaaaataaaaaatggaaactattcaaatttgcaattaacatatt |
52731029 |
T |
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| Q |
106 |
gtaaacttatgttatgtgcaccactaaacttttattttaattagtgaagctaacactaggactaacttttccaagaagtaggcaaaaggaaggaggagaa |
205 |
Q |
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| T |
52731030 |
gtaaacttatgttatgtgcaccactaaacttttatgttaattagtgaagataacactaggactaacttttccaagaagtaggcaaaaggaaggaggagaa |
52731129 |
T |
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| Q |
206 |
gaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacccatgttaagggcagctcttgagacgacatggaaaccagcatatccaaactg |
305 |
Q |
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| T |
52731130 |
gaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacccatgttaagggcagctcttgagacgacatggaaaccagcatatccaaactg |
52731229 |
T |
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| Q |
306 |
cagggccaacatggccgcatgcagctgaaaccgttctggtatggagcaccacattctccccgaagatccacctgaatcagccattactgtactatggagc |
405 |
Q |
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| T |
52731230 |
cagggccaacatggccgcatgcagctgaaaccgttctggtatggagcaccacattctccccgaagatccacctgaatcagccattactgtactatggagc |
52731329 |
T |
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| Q |
406 |
tagtcttgttattctaagataagattattaagatgggagaggaagtgatgtgaagaggtggtggaagagtaagggtataaatatagtgaagaggggaaag |
505 |
Q |
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| T |
52731330 |
tagtcttgttattctaagataagattattaagaagggagaggaagtgatgtgaagaggtggtggaagagtaagggtataaatatagtgaagaggggaaag |
52731429 |
T |
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| Q |
506 |
tatgaccccacaatgaccataaaaagacgttttgtcaactgttggtagcattcaaatgtttctgctttgtcttccacattcttctttgatattcatt |
602 |
Q |
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| T |
52731430 |
tatgaccccacaatgaccataaaaagacgttttgtcaactgttggtagcattcaaatgtttctgctttgtcttccacattcttctttgatattcatt |
52731526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 167 - 335
Target Start/End: Original strand, 7370192 - 7370360
Alignment:
| Q |
167 |
ctaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacccatgttaagggc |
266 |
Q |
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| T |
7370192 |
ctaacttttccaagaaataagcaaatggaaggaggagaagcaaagcaatgatgtttctatagacagggaaaacaagtttgctaactcccatgttaagtgc |
7370291 |
T |
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| Q |
267 |
agctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaa |
335 |
Q |
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| T |
7370292 |
agctcttgaaacaacatggaaaccagcataaccaaactgcaaggccaacatggccacatgcagctgaaa |
7370360 |
T |
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