View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_low_7 (Length: 538)

Name: NF11747_low_7
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_low_7
NF11747_low_7
[»] chr7 (9 HSPs)
chr7 (218-519)||(46028422-46028723)
chr7 (70-165)||(46028274-46028369)
chr7 (270-519)||(26557858-26558107)
chr7 (224-400)||(23176890-23177065)
chr7 (218-332)||(40188169-40188283)
chr7 (240-329)||(12258376-12258465)
chr7 (228-412)||(33743390-33743574)
chr7 (270-341)||(33888605-33888676)
chr7 (71-156)||(19513534-19513620)
[»] chr1 (11 HSPs)
chr1 (218-519)||(52372471-52372782)
chr1 (218-412)||(25410555-25410749)
chr1 (228-510)||(51871023-51871305)
chr1 (218-399)||(44503937-44504118)
chr1 (218-400)||(9644301-9644483)
chr1 (218-341)||(40799640-40799763)
chr1 (270-341)||(21926608-21926678)
chr1 (239-329)||(13297595-13297685)
chr1 (101-165)||(52372835-52372900)
chr1 (235-315)||(3227649-3227729)
chr1 (226-330)||(15274347-15274451)
[»] chr6 (6 HSPs)
chr6 (277-519)||(12833951-12834194)
chr6 (242-403)||(51921-52082)
chr6 (225-400)||(9557358-9557533)
chr6 (427-519)||(32470036-32470128)
chr6 (270-330)||(9755699-9755759)
chr6 (295-412)||(19290215-19290332)
[»] chr3 (7 HSPs)
chr3 (283-515)||(1762039-1762271)
chr3 (236-444)||(26982031-26982239)
chr3 (224-517)||(34212962-34213254)
chr3 (228-332)||(4778030-4778134)
chr3 (226-330)||(2833286-2833394)
chr3 (228-330)||(41640824-41640926)
chr3 (270-509)||(1045406-1045645)
[»] chr8 (12 HSPs)
chr8 (224-519)||(41926831-41927126)
chr8 (218-333)||(42032730-42032845)
chr8 (224-519)||(42241217-42241511)
chr8 (265-517)||(4040348-4040601)
chr8 (70-165)||(42032899-42032992)
chr8 (228-425)||(24604742-24604939)
chr8 (224-341)||(34152007-34152124)
chr8 (233-321)||(32073929-32074017)
chr8 (281-412)||(7656846-7656977)
chr8 (228-330)||(2074795-2074897)
chr8 (263-330)||(36650457-36650524)
chr8 (290-332)||(38492761-38492803)
[»] chr2 (4 HSPs)
chr2 (227-425)||(43411419-43411617)
chr2 (235-461)||(10994301-10994527)
chr2 (273-509)||(29682523-29682758)
chr2 (218-332)||(41074545-41074658)
[»] chr4 (10 HSPs)
chr4 (218-518)||(50655057-50655356)
chr4 (226-520)||(45068115-45068409)
chr4 (224-403)||(30251386-30251565)
chr4 (218-400)||(19469578-19469759)
chr4 (218-390)||(23012323-23012495)
chr4 (225-469)||(12842920-12843164)
chr4 (233-332)||(24065097-24065196)
chr4 (270-459)||(48309657-48309846)
chr4 (271-315)||(4866794-4866838)
chr4 (273-458)||(44616698-44616887)
[»] chr5 (6 HSPs)
chr5 (272-411)||(41650444-41650583)
chr5 (287-517)||(3465354-3465579)
chr5 (231-400)||(27639444-27639613)
chr5 (224-326)||(33861926-33862027)
chr5 (380-459)||(16154585-16154664)
chr5 (364-411)||(39774290-39774337)
[»] scaffold0329 (1 HSPs)
scaffold0329 (218-331)||(18408-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (270-329)||(83252-83311)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 218 - 519
Target Start/End: Original strand, 46028422 - 46028723
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46028422 taccgttgccaacaaagaacgggctgcacctcccacttataaaaggagtagaaactagcaggacacttagccaggaaccacttccaagctaagagtttcg 46028521  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaag 417  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  46028522 ctctatccaccacagacccctcactatgggcaccatcagaaaaaacaaggtcattccgggaagttcagatggtccaaataacagcatgccaaacagtaag 46028621  T
Q  418 taaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccaccta 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46028622 taaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgtcgggctaaacctaaagggatcacaaactcccaccccaaccaccta 46028721  T
Q  518 ga 519  Q
    ||    
T  46028722 ga 46028723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 46028274 - 46028369
Alignment:
Q  70 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 165  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  46028274 tggcccccggaaagggttccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaagttggataggtagaggcaaag 46028369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 519
Target Start/End: Original strand, 26557858 - 26558107
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtc 369  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||  |||| |||||||||| | ||||||   |    ||||||| ||| | | ||||    
T  26557858 aactagcagggcacttagccaggagccactaccaagctaaaagtttaactctgtccaccacaggctcctcacggagtaagccaccagcaaagatacggtc 26557957  T
Q  370 attccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaac 469  Q
     |||  ||| | ||| ||||||||||||||| || ||||||||  ||| |||||||  ||||| | | ||||||  ||||| ||||||||||   | |||    
T  26557958 gttctaggatgcccaaatggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctcctcccccctcctaaacccgtaaaggcctgaaac 26558057  T
Q  470 tgccgggctaaacctaaagggatcacaaactcccaccccaaccacctaga 519  Q
    ||| ||||||| || |  || |||||||| ||||| ||||||||||||||    
T  26558058 tgctgggctaaccccatgggcatcacaaaatcccaacccaaccacctaga 26558107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 224 - 400
Target Start/End: Original strand, 23176890 - 23177065
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    |||||||| |||||||||||||||||| || ||| | | | |||  |||||||| | ||||| || ||||||| ||||||||||||||||||| ||||||    
T  23176890 tgccaacataggacgggctgcacctccaactcatgataagtgcatgaactagcatgacacttggcaaggaaccgcttccaagctaagagtttcactctat 23176989  T
Q  324 ccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataaca 400  Q
     |||||||| | ||||||   | |  |||| ||| |||| |||| | ||||| || |||||||||||||||||||||    
T  23176990 acaccacaggctcctcacggagagtgccactagagaaaataagg-cgttccgagacgtccagatggtccaaataaca 23177065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 40188169 - 40188283
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| |||||||| | |||| ||||||||||| || ||| | | | |||  |||||||||||||||||| || ||||||||||||||||| |||||| |    
T  40188169 taccgctgccaacacaagacgagctgcacctcctactcatgataagtgcaagaactagcagggcacttaggcaagaaccacttccaagctatgagttttg 40188268  T
Q  318 ctctatccaccacag 332  Q
    || ||||||||||||    
T  40188269 ctttatccaccacag 40188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 12258465 - 12258376
Alignment:
Q  240 gctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 329  Q
    |||||||||||||| |||| |  ||||||  ||| ||||| |||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  12258465 gctgcacctcccactcatagagagagcagggactggcaggacacttagccaggaaccactttcaagctaagagtttaactctatccacca 12258376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 412
Target Start/End: Complemental strand, 33743574 - 33743390
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| |||||||| |||||||||||| |||| |  || |||  |||||||||||||||||||| ||||||||| |||||||||| |||  |||| |||||    
T  33743574 aacacaggacgggttgcacctcccactcatagagagaacagggactagcagggcacttagccaagaaccactttcaagctaagattttaactctgtccac 33743475  T
Q  328 cacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaaca 412  Q
    ||| | | |||| |   |    ||||||| ||| | |||||| || ||||| | ||| |||||||||||||||||| ||||||||    
T  33743474 cactggctcctctcggagtaagccaccagcaaagataaggtcgtttcgggacgcccaaatggtccaaataacagcatgccaaaca 33743390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 33888676 - 33888605
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 341  Q
    |||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||||| ||| ||||||    
T  33888676 aactagcagggcacttagcccgaaaccacttccaatctaagagttccactctatccaccactgactcctcac 33888605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 19513620 - 19513534
Alignment:
Q  71 ggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggta 156  Q
    ||||||| ||||||| |||| || | | ||| |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  19513620 ggcccccagaaagggacccgccataccaagcgcacccaacaaggaaaaagcgcaaggagagacccaagaagacaggtcggataggta 19513534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 218 - 519
Target Start/End: Complemental strand, 52372782 - 52372471
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  52372782 taccgctgccaacaaaggatgggttgcacctcccactcataaaaagagcaggaactagcagggcacctagccaggaaccacttctaagctaagagtttcg 52372683  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaa----------aaaacaaggtcattccgggaagtccagatggtccaaataacagcacgcc 407  Q
    ||||||||||||||||||||||||||||||| |||||||||          |||| ||||||||||||||| ||||||||||||||||||| |||| |||    
T  52372682 ctctatccaccacagacccctcactatgggcgccaccagaagaagaagaagaaaaaaaggtcattccgggaggtccagatggtccaaataatagcatgcc 52372583  T
Q  408 aaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccc 507  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |||||||| ||| | ||| ||    
T  52372582 aaacaataagtaaacatattctaacacgcttccccctacctaacccggtaaaggaaaggaactgtcaggctaaacctatagggatcaaaaatttccaacc 52372483  T
Q  508 caaccacctaga 519  Q
    ||||||||||||    
T  52372482 caaccacctaga 52372471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 218 - 412
Target Start/End: Original strand, 25410555 - 25410749
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    |||||||| ||||| | ||||||||||||||||||| |||| || |||||| |||||||| || |||||||||||||||||||||||||||||||||||     
T  25410555 taccgttggcaacacaagacgggctgcacctcccactcatagaaagagcaggaactagcaaggtacttagccaggaaccacttccaagctaagagtttca 25410654  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaaca 412  Q
    ||||||||| |||||   |||| | | | ||||||||| |||||| ||| ||| |  | |||||| ||||||| |||||||||||| ||||||||    
T  25410655 ctctatccatcacaggttcctctcgaagagcaccaccaaaaaaaataagatcactatgagaagtctagatggttcaaataacagcatgccaaaca 25410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 228 - 510
Target Start/End: Complemental strand, 51871305 - 51871023
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| ||||||||||||||||||||| |||| |  || ||| |||||||||||||||||| |||||||||||||||||||||||||||   |||||||||    
T  51871305 aacacaggacgggctgcacctcccactcatagagagaacaggaactagcagggcacttagtcaggaaccacttccaagctaagagtttaattctatccac 51871206  T
Q  328 cacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctatt 427  Q
    ||| | | ||||||   |  ||||| ||  ||| | ||||||||| ||||  ||||| |||||||| ||||||||| ||||||||  ||| |||||||      
T  51871205 cactggctcctcacggagaacaccaacaacaaagataaggtcatttcgggtcgtccaaatggtccagataacagcatgccaaacaagaagcaaacctaac 51871106  T
Q  428 ctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaa 510  Q
    ||||| | | |||||| |||||| ||||||||||   | |||||| || |||  || | ||| |||||||||||||| |||||    
T  51871105 ctaactctcgtccccccacctaaacccgtaaaggcctgaaactgctggactagcccaagaggcatcacaaactcccaacccaa 51871023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 218 - 399
Target Start/End: Original strand, 44503937 - 44504118
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| ||||| ||||||||| |||||||||||||| ||| ||| |||||| ||||| || | ||||||| || ||||||||||||||||||||| |||     
T  44503937 taccggtgccagcaaaggacgagctgcacctcccactcatgaaaagagcaggaactaccacgacacttagtcatgaaccacttccaagctaagagcttca 44504036  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataac 399  Q
    || |||||||||||| | |||||| | | || |||||||| ||||  ||||| ||||  || ||||| ||||||||||||||    
T  44504037 ctttatccaccacaggctcctcacgaagagcgccaccagagaaaatgaggtcgttccaagacgtccaaatggtccaaataac 44504118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 400
Target Start/End: Complemental strand, 9644483 - 9644301
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| ||||| ||||||||| | || ||||||||  ||| |||||||||  |||||| ||| |||||||| ||||||||||||||| | ||||||||||    
T  9644483 taccgatgccagcaaaggacgagatgtacctcccattcatgaaaggagcaagaactagtaggacacttagctaggaaccacttccaacccaagagtttcg 9644384  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataaca 400  Q
    |||||||||||| || | ||||||   | |  |||||||| || | |||||| ||||||||  ||||||||||||||||||||    
T  9644383 ctctatccaccataggctcctcacggagagagccaccagagaagataaggtcgttccgggacatccagatggtccaaataaca 9644301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 40799763 - 40799640
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| ||||| ||||||||| |||||||||||||| ||| ||| |||||  ||||||||  ||||||||| |||||| |||| ||||| |||||||||     
T  40799763 taccgatgccagcaaaggacgagctgcacctcccactcatgaaaagagcaagaactagcaatgcacttagctaggaacaactttcaagccaagagtttca 40799664  T
Q  318 ctctatccaccacagacccctcac 341  Q
    ||||||||||||||| | ||||||    
T  40799663 ctctatccaccacaggctcctcac 40799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 21926678 - 21926608
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 341  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  21926678 aactagcagggcacttagccag-aaccacttccaggctaagagtttcactctatccaccacagactcctcac 21926608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 13297685 - 13297595
Alignment:
Q  239 ggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 329  Q
    ||||||||||||||| ||| | | | |||| |||||||||| |||||||||| |||||| || ||||||||||||||| ||||||||||||    
T  13297685 ggctgcacctcccactcatgataagtgcaggaactagcaggacacttagccatgaaccaatttcaagctaagagtttcactctatccacca 13297595  T

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Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 52372900 - 52372835
Alignment:
Q  101 cacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 165  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  52372900 cacatccagcaaggaaaaagcgcaaggagagacccaagaagacaggccggagaggtagaggcaaag 52372835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 3227649 - 3227729
Alignment:
Q  235 gacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagttt 315  Q
    |||||| ||||| |||||| |||| |  || |||| |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  3227649 gacgggttgcacttcccactcatagagagaacagagactagcagggcacttaaccaggaatcactttcaagctaagagttt 3227729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 15274451 - 15274347
Alignment:
Q  226 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc 325  Q
    |||||| ||||| | ||||||||||||| |||| |  || ||  |||||||||| |||||||| ||||| ||||| |||||||| |||||| |||| |||    
T  15274451 ccaacacaggacagactgcacctcccactcatagagagaacatgaactagcaggacacttagctaggaatcacttacaagctaaaagtttcactctgtcc 15274352  T
Q  326 accac 330  Q
    |||||    
T  15274351 accac 15274347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 277 - 519
Target Start/End: Original strand, 12833951 - 12834194
Alignment:
Q  277 agggcacttagccaggaaccacttccaagctaagagt-ttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccg 375  Q
    |||| |||||| ||||||||||| |||||||||||||    |||||||||||||||| ||||||| || ||| ||||| |||||||| ||| ||||||||    
T  12833951 agggtacttagtcaggaaccactcccaagctaagagtagaggctctatccaccacaggcccctcattaagggtaccactagaaaaaataagatcattccg 12834050  T
Q  376 ggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgg 475  Q
    | |  ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||    
T  12834051 gaacatccagatggtccaaataacagcatgccaaacaataaataaacctattctaacacgattccccctacctaaacctgtaaaggaaaggaactgctgg 12834150  T
Q  476 gctaaacctaaagggatcacaaactcccaccccaaccacctaga 519  Q
    |||| ||| | |||||| ||||||||||| ||||||||||||||    
T  12834151 gctagacccatagggatgacaaactcccaacccaaccacctaga 12834194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 242 - 403
Target Start/End: Complemental strand, 52082 - 51921
Alignment:
Q  242 tgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcac 341  Q
    |||||||||||| |||| || | |||  |||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||| || | |||| |    
T  52082 tgcacctcccactcatataaagtgcaagaactagcaagacacttagccaggaaccacttccaagctaagagtttagctcgatccaccataggctcctctc 51983  T
Q  342 tatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagca 403  Q
    |  |||  ||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||    
T  51982 tgagggagccaccagaaaagataaggtcattacgggacgtccagatggtccaaataacagca 51921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 225 - 400
Target Start/End: Original strand, 9557358 - 9557533
Alignment:
Q  225 gccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatc 324  Q
    |||| |||||||||||||||||||||||| ||| | | | |||| | |||||||| ||||||| |||||| |||||||||||||||| ||| || | |||    
T  9557358 gccagcaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagtcaggaatcacttccaagctaagaattttgccccatc 9557457  T
Q  325 caccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataaca 400  Q
    |||||| ||||  |||| |||||  ||||||| | ||| ||||||||| ||||| ||| |||||||||||||||||    
T  9557458 caccaccgacctatcacaatgggtgccaccagcagaaataaggtcatttcgggacgtcaagatggtccaaataaca 9557533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 427 - 519
Target Start/End: Complemental strand, 32470128 - 32470036
Alignment:
Q  427 tctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccacctaga 519  Q
    |||||||||||||||||| ||||  ||||||||| | ||||||||  | |||| |||||| |||| |||||||||||| || |||||||||||    
T  32470128 tctaacacgcttccccctccctagacccgtaaagtacaggaactgttgagctagacctaaggggaccacaaactcccaacctaaccacctaga 32470036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 9755699 - 9755759
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 330  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||| || | ||||||||    
T  9755699 aactagcagggcacttagcccgaaaccacttccaaactaagagtttcactttgtccaccac 9755759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 19290332 - 19290215
Alignment:
Q  295 ccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaa 394  Q
    |||||| ||| ||||||||||  |||||||||||| || | || |||  ||  | ||||||  ||| | ||||||||||||||| |||||||| || |||    
T  19290332 ccactttcaaactaagagtttttctctatccaccaaaggctccacacgctgtacgccaccaccaaacataaggtcattccgggatgtccagattgttcaa 19290233  T
Q  395 ataacagcacgccaaaca 412  Q
    ||||||||| | ||||||    
T  19290232 ataacagcatgtcaaaca 19290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 283 - 515
Target Start/End: Original strand, 1762039 - 1762271
Alignment:
Q  283 cttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtc 382  Q
    |||||||| ||||||||||||||||||||||||||||||||| | || |  | ||||||||||| | |||||| |||||| ||| ||||||| ||| |||    
T  1762039 cttagccatgaaccacttccaagctaagagtttcgctctatctatcaaatgcacctcactatggacgccaccaaaaaaaataagctcattccaggacgtc 1762138  T
Q  383 cagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaac 482  Q
    |||||||||||||||||| || ||||||||  |||||||| |||||||||||||||||||||| |||| | | ||||||||||||| ||  | |||| ||    
T  1762139 cagatggtccaaataacaacatgccaaacaagaagtaaacatattctaacacgcttccccctatctaaactcataaaggaaaggaattgttgagctagac 1762238  T
Q  483 ctaaagggatcacaaactcccaccccaaccacc 515  Q
    |||  ||||||||||||||||| ||||||||||    
T  1762239 ctatggggatcacaaactcccaacccaaccacc 1762271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 444
Target Start/End: Original strand, 26982031 - 26982239
Alignment:
Q  236 acgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacc 335  Q
    |||||||| ||||||||| ||| | ||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |     
T  26982031 acgggctgaacctcccactcatgataggtgcaggaacttgcagggcacttagccaagaaccacttccaagctaagagttttactctatccaccacaggct 26982130  T
Q  336 cctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacg 435  Q
    |||||| | |||  |||||||| |||| ||||| ||| |  ||||||   | |||| |||| |||||| |||||||   ||| |||||||| ||||| |     
T  26982131 cctcacgaagggtgccaccagagaaaataaggttatttctagaagtcagaacggtctaaatgacagcatgccaaaccagaagcaaacctatcctaactct 26982230  T
Q  436 cttccccct 444  Q
    |||||||||    
T  26982231 cttccccct 26982239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 517
Target Start/End: Complemental strand, 34213254 - 34212962
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    |||||||| ||||||||||||||||| ||| | | | | | |||  |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  34213254 tgccaacacaggacgggctgcacctcacactcgtgataagtgcatgaactagcatggcacttagccatgaaccacttccaagctaagagtttcactctat 34213155  T
Q  324 ccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacc 423  Q
    |||| ||||   ||||||   | || |||||||| |||| |||||| ||  |||| ||||| |||||||| |||||| || | |||||   || || |||    
T  34213154 ccacaacaggttcctcacggagagcgccaccagagaaaataaggtcgttttgggacgtccaaatggtccatataacatcatggcaaactagaaatagacc 34213055  T
Q  424 tattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccaccta 517  Q
    || |||||| |  |||||||| ||||| | ||||||||   |||| ||||| || | ||| |  ||||||||||||||||| || |||||||||    
T  34213054 taatctaactctgttccccct-cctaagctcgtaaaggcgtggaattgccgtgcaagaccaagggggatcacaaactcccaacctaaccaccta 34212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 4778134 - 4778030
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| ||||||||||||||||||||| |||| |  ||||||  ||||||||||||| ||||| |||||||||||||| ||||||||||  ||||||||||    
T  4778134 aacacaggacgggctgcacctcccactcatagagagagcagggactagcagggcacctagcctggaaccacttccaaactaagagtttaactctatccac 4778035  T
Q  328 cacag 332  Q
    |||||    
T  4778034 cacag 4778030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 226 - 330
Target Start/End: Original strand, 2833286 - 2833394
Alignment:
Q  226 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaa----ctagcagggcacttagccaggaaccacttccaagctaagagtttcgctct 321  Q
    |||||| ||||||||||||||||||||| |||| |  |||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  2833286 ccaacataggacgggctgcacctcccactcatagagagagcaggaactagctagcagggcacttagccatgaaccacttccaagctaagagtttcactct 2833385  T
Q  322 atccaccac 330  Q
    ||| |||||    
T  2833386 atctaccac 2833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 228 - 330
Target Start/End: Complemental strand, 41640926 - 41640824
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| ||||||||||||||||||||| ||||    |||||| |||||||||||||||||||| | ||||||||||||| |||||||||  |||| |||||    
T  41640926 aacacaggacgggctgcacctcccactcatagggagagcaggaactagcagggcacttagcccgaaaccacttccaagttaagagtttaactctgtccac 41640827  T
Q  328 cac 330  Q
    |||    
T  41640826 cac 41640824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 509
Target Start/End: Original strand, 1045406 - 1045645
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtc 369  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||| | | |||||    |  ||||||||| ||| | ||||||    
T  1045406 aactagcagggcacttagccaggaaccacttccaagctgagagtttaaccctatccaccactggctcctcatggagaacaccaccagcaaagataaggtc 1045505  T
Q  370 attccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaac 469  Q
    |||| |||  | ||| ||| || | |||||| || ||||||||  ||| |||| ||  ||||| | | |||||| |||||| ||| ||||||   | |||    
T  1045506 attctgggtcgcccaaatgatcgagataacaacatgccaaacaagaagcaaacataacctaactctcctccccccacctaaacccataaaggcctgaaac 1045605  T
Q  470 tgccgggctaaacctaaagggatcacaaactcccacccca 509  Q
    ||| ||||||  || ||||| |||||||||||||| ||||    
T  1045606 tgctgggctagccccaaaggcatcacaaactcccaaccca 1045645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 519
Target Start/End: Complemental strand, 41927126 - 41926831
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    |||||||| |||| ||| |||| ||||||| |||| ||  ||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  41927126 tgccaacacaggaaggggtgcatctcccactcatagaaaaagcaggaatttgcacggcacttagccaggaaccacttccaagctaagagattcgctctat 41927027  T
Q  324 ccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacc 423  Q
    ||||||||| | |||| | | | |||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||   ||| | |||    
T  41927026 ccaccacaggctcctctcgaagagcaccaccagaaaaaataagatcattccgagaagtccaaatggtccaaataacagcatgccaaaccagaagcagacc 41926927  T
Q  424 tattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccacctaga 519  Q
    ||  ||| | | | |||| | |||||| ||||||||| | ||||||||  |||| | |||||  ||||| || |||||||||||||||||||||||    
T  41926926 taacctagctctcctcccaccacctaagcccgtaaagtacaggaactgttgggcaagacctagtgggataactaactcccaccccaaccacctaga 41926831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 42032845 - 42032730
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  42032845 taccgttgccaacaaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagccaggaaccacttccaagctaagagtttcg 42032746  T
Q  318 ctctatccaccacaga 333  Q
    |||||| |||||||||    
T  42032745 ctctattcaccacaga 42032730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 224 - 519
Target Start/End: Original strand, 42241217 - 42241511
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    ||||| || |||||||| |||||||||||| ||    | | |||| |||||| || || ||| ||||||||||||||||||||||||||||||||| |||    
T  42241217 tgccagcacaggacgggttgcacctcccactcaaggtaagtgcaggaactagtagagcgcttcgccaggaaccacttccaagctaagagtttcgctttat 42241316  T
Q  324 ccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacc 423  Q
    |||||| || | ||||||   |||| ||||||||||||  |||||| || | ||| ||||||||||| |||||||||||| | |||||| | || |||||    
T  42241317 ccaccaaaggctcctcacggagggcgccaccagaaaaat-aaggtcgtttctggatgtccagatggttcaaataacagcatgtcaaacaatgagcaaacc 42241415  T
Q  424 tattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccacctaga 519  Q
    || |||||| | |||||||| |||||| ||||| |||||  | |||||| |||||| ||| | |||   |||||||||||||||||||||||||||    
T  42241416 tagtctaacgctcttccccccacctaatcccgtgaaggacggaaactgctgggctagacccataggagacacaaactcccaccccaaccacctaga 42241511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 265 - 517
Target Start/End: Original strand, 4040348 - 4040601
Alignment:
Q  265 gcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc-accacagacccctcactatgggcaccaccagaaaaaac 363  Q
    |||| |||||||||  | ||| ||||||||| |||||||||||||| |||||||||||||| |||| |||| |||| | |  ||  |||||||||||||     
T  4040348 gcaggaactagcagaacgcttcgccaggaactacttccaagctaagggtttcgctctatcccaccaaagactcctctcgaaaggtgccaccagaaaaaat 4040447  T
Q  364 aaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaa 463  Q
    |||||| || | ||| |||||||||||||| |||||| || |||||||| | || |||||||  ||||||| |||||||| |||||| ||||| ||| |     
T  4040448 aaggtcgtttctggatgtccagatggtccagataacaacatgccaaacaatgagcaaacctagcctaacactcttccccccacctaatcccgtgaagaac 4040547  T
Q  464 aggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccaccta 517  Q
    || |||||  |||||| ||| | |||   |||||||||||||| ||||||||||    
T  4040548 agaaactgttgggctagacccataggagacacaaactcccaccacaaccaccta 4040601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 42032992 - 42032899
Alignment:
Q  70 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 165  Q
    ||||||||| ||||||||||  |||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  42032992 tggcccccgaaaagggccccaccacaaccagcgcacccaacaaggaaaagcgcaaggagaga--caagaagacaggctggaaaggtagaggcaaag 42032899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 228 - 425
Target Start/End: Complemental strand, 24604939 - 24604742
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| |||| |||||||||||||||| ||| | | ||| | ||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  24604939 aacataggatgggctgcacctcccactcatgataagagaaaaaactagcaggccacttagccaagaaccactttcaatctaagagtttcgctctatccac 24604840  T
Q  328 cacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaaccta 425  Q
    |||   | |||| |   ||| |||||||| |||||  ||||||||||  || ||||| ||||| ||||| ||| || ||||||||  ||| |||||||    
T  24604839 caccagctcctctcggagggtaccaccagcaaaaatcaggtcattcctagacgtccaaatggtacaaatgacatcatgccaaacaagaagcaaaccta 24604742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 34152007 - 34152124
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    ||||||||||||| ||| |||||||||||| ||| ||| | |||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  34152007 tgccaacaaaggatgggttgcacctcccactcatgaaaagtgcaggaactgctagggcgcttagccaggaaccacttccaagctaagagtttagctctat 34152106  T
Q  324 ccaccacagacccctcac 341  Q
    |||| |||| | ||||||    
T  34152107 ccacaacaggctcctcac 34152124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 321
Target Start/End: Original strand, 32073929 - 32074017
Alignment:
Q  233 aggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctct 321  Q
    |||||||||||| |||||||| |||||||||||||| |||||| ||| ||||||||||| || ||||||||| ||||||||||| ||||    
T  32073929 aggacgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagccagaaatcacttccaaactaagagtttcactct 32074017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 7656846 - 7656977
Alignment:
Q  281 cacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaag 380  Q
    |||||||  |||||||||||||||  |||||||||| ||||||||||||||| | ||||||   |  | ||||| |||||||| |||||||||||||| |    
T  7656846 cacttagttaggaaccacttccaaattaagagtttcactctatccaccacaggctcctcacggagtacgccacctgaaaaaactaggtcattccgggacg 7656945  T
Q  381 tccagatggtccaaataacagcacgccaaaca 412  Q
    |  |||||||| |||| |||||| | ||||||    
T  7656946 tttagatggtctaaatgacagcatgtcaaaca 7656977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 330
Target Start/End: Original strand, 2074795 - 2074897
Alignment:
Q  228 aacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccac 327  Q
    |||| |||||||| |||||||||||| |||| |  || ||| |||||||||||||||||||| ||||| ||||| || ||||||||||  || |||||||    
T  2074795 aacacaggacgggttgcacctcccactcatagagagaacaggaactagcagggcacttagcctggaacaacttcaaaactaagagtttaactatatccac 2074894  T
Q  328 cac 330  Q
    |||    
T  2074895 cac 2074897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 36650457 - 36650524
Alignment:
Q  263 gagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 330  Q
    |||||| |||||||| | ||||||||| ||||||||| |||||||||||||||  |||| ||||||||    
T  36650457 gagcaggaactagcaagacacttagcccggaaccactcccaagctaagagtttaactctgtccaccac 36650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 38492761 - 38492803
Alignment:
Q  290 aggaaccacttccaagctaagagtttcgctctatccaccacag 332  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  38492761 aggaaccactttcaagctaagagtttcgctttatccaccacag 38492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 227 - 425
Target Start/End: Complemental strand, 43411617 - 43411419
Alignment:
Q  227 caacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcca 326  Q
    ||||||||||||||||||||||||||| ||| | | | |||| | |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  43411617 caacaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagccaggaaacactttcaagctaagagtttcgctctatcca 43411518  T
Q  327 ccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaaccta 425  Q
    ||| |||| || ||| | | |||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||| |||||   |||||||||||    
T  43411517 ccaaagactccacaccacgagcaccaccagaaaacacaaggtcattctgggacgtccagatggtccaaataatagcacgtcaaaccagaagtaaaccta 43411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 235 - 461
Target Start/End: Complemental strand, 10994527 - 10994301
Alignment:
Q  235 gacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagac 334  Q
    ||||||||||||||||||| |||| |  || | | ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |    
T  10994527 gacgggctgcacctcccactcatagagagaacgggaactagcagggcacttagccaggaaccacttccaagctaagagtttaactctatccaccactggc 10994428  T
Q  335 ccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacac 434  Q
      |||||   |  ||||||||| ||| | ||||||||| ||||    ||| |||||||| ||||||||| ||||||||  ||| |||||||  ||||| |    
T  10994427 ttctcacggagaacaccaccagcaaagataaggtcattacgggtctcccaaatggtccagataacagcatgccaaacaaaaagcaaacctaacctaactc 10994328  T
Q  435 gcttccccctacctaaccccgtaaagg 461  Q
     | |||||| |||||| | ||||||||    
T  10994327 tcctccccccacctaaacacgtaaagg 10994301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 273 - 509
Target Start/End: Complemental strand, 29682758 - 29682523
Alignment:
Q  273 tagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcatt 372  Q
    ||||||||  ||||||| ||||||||||| |||||||||||||  |||||||||||||   | | || |   | |||||||||| ||| | |||||||||    
T  29682758 tagcagggtgcttagcctggaaccacttctaagctaagagtttaactctatccaccactagctcatctcggagagcaccaccagcaaagataaggtcatt 29682659  T
Q  373 ccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgc 472  Q
    |||||| | ||| ||||||||||||||| || ||||||||  ||| |||||||  ||||| | | ||||||| || ||||||||||||| | | ||||||    
T  29682658 ccgggacgcccaaatggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctcctccccct-cccaaccccgtaaaggcatgaaactgc 29682560  T
Q  473 cgggctaaacctaaagggatcacaaactcccacccca 509  Q
     ||||||  || |  || |||||||||||||| ||||    
T  29682559 tgggctagccccagtggcatcacaaactcccaaccca 29682523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 41074545 - 41074658
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| ||||| || || ||||||||||||| |||| ||| ||| | | || | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  41074545 taccgatgccagcacagaacgggctgcaccttccactcatgaaaagtgaagga-ctagcagggcacttagccaggaaccactttcaagctaagagtttcg 41074643  T
Q  318 ctctatccaccacag 332  Q
    || | ||||||||||    
T  41074644 ctttgtccaccacag 41074658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 218 - 518
Target Start/End: Original strand, 50655057 - 50655356
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| |||||||||||||| || |||||||||||| |||  ||  ||||  |||||||||| ||||||||||||||||||||||||||||||||||| |    
T  50655057 taccgctgccaacaaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagccaggaaccacttccaagctaagagtttag 50655156  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaag 417  Q
    |   ||||| ||||||| |||| ||  |||| ||||||||||| | ||||||||| ||||| |||||||||||||||||||||||| |||||||    ||    
T  50655157 cctgatccatcacagactcctctctgagggcgccaccagaaaagataaggtcattacgggacgtccagatggtccaaataacagcatgccaaaccaggag 50655256  T
Q  418 taaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccaccta 517  Q
     |||||||  ||||| | ||||||||| ||||| |||||||| || | ||||||  | |||| ||||   || |||||||||||||| ||||||||||||    
T  50655257 caaacctaacctaactctcttccccct-cctaagcccgtaaaagacatgaactgttgtgctagaccttggggaatcacaaactcccaacccaaccaccta 50655355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 226 - 520
Target Start/End: Original strand, 45068115 - 45068409
Alignment:
Q  226 ccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatcc 325  Q
    ||||||||||||||| |||||||||| | ||| | | | | || ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45068115 ccaacaaaggacgggttgcacctccccctcatgataagtgtaggaactgccagggcacttagccaggaaccacttccaagctaagagtttagctctatcc 45068214  T
Q  326 accacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaaccta 425  Q
    || |||| | |||||  | | |  | || |||||| | |||||| ||| |||| ||||||||| ||||||||| | || | ||||||  ||| |||||||    
T  45068215 actacaggctcctcatgaagagtgcaactagaaaacaaaaggtcgttcagggacgtccagatgttccaaataaaaacatgtcaaacaagaagcaaaccta 45068314  T
Q  426 ttctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaaagggatcacaaactcccaccccaaccacctagat 520  Q
      || || | |||||||| |||||| |||||||| || ||||||| |  ||| | ||  | |||| |||||||||||||  ||||||||||||||    
T  45068315 acctcactctcttccccccacctaaacccgtaaaagacaggaactactaggcaagacgaagaggggtcacaaactcccaaaccaaccacctagat 45068409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 224 - 403
Target Start/End: Original strand, 30251386 - 30251565
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    ||||| |||||||| |||| |||||||||| ||| ||  |||||  ||||  ||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  30251386 tgccagcaaaggaccggctacacctcccactcatgaacagagcaagaacttccagggcacttagccaggaaccactttcaagccaagagtttcactctat 30251485  T
Q  324 ccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagca 403  Q
    ||||||||||| ||||||   | || ||| |||| |||| |||||| || | ||| ||||| ||||||||||||||||||    
T  30251486 ccaccacagactcctcacggagagccccaacagagaaaataaggtcgtttcaggacgtccaaatggtccaaataacagca 30251565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 218 - 400
Target Start/End: Complemental strand, 19469759 - 19469578
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| |||||||||||||| |||| |||||||||| ||| | | | |||| |||||||||  |||||| | ||||||||||||||||||||||  || |    
T  19469759 taccgatgccaacaaaggacaggctacacctcccactcatgataagtgcaggaactagcaga-cacttaactaggaaccacttccaagctaagaactttg 19469661  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataaca 400  Q
    ||||||||||||||  | |||||  |||||| ||||||| ||| | || |||||||| |||||| ||||||||||||||||||    
T  19469660 ctctatccaccacatgctcctcagaatgggcgccaccagcaaataaaatgtcattccaggaagttcagatggtccaaataaca 19469578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 218 - 390
Target Start/End: Original strand, 23012323 - 23012495
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| || ||||| |||||| |||||||||||||  ||| | | | |||||||||||||   |||||||||| |||||| |||||| |||||||||||     
T  23012323 taccgatgtcaacacaggacgtgctgcacctcccattcatgataagtgcagaaactagcacaacacttagccatgaaccaattccaaactaagagtttca 23012422  T
Q  318 ctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggt 390  Q
    ||||||||||||| | | ||||||   | ||||||||||| |||| |||||| ||||| || ||||| |||||    
T  23012423 ctctatccaccacgggctcctcacagagagcaccaccagagaaaataaggtcgttccgagacgtccaaatggt 23012495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 225 - 469
Target Start/End: Original strand, 12842920 - 12843164
Alignment:
Q  225 gccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatc 324  Q
    ||||||| ||||||| |||||||||  ||   ||| ||||||||  ||||||| |  |||||| ||||||||||||||||  ||||||||| ||||| ||    
T  12842920 gccaacacaggacggactgcacctctaactggtaataggagcagggactagcatgatacttagtcaggaaccacttccaaagtaagagtttagctctctc 12843019  T
Q  325 caccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacct 424  Q
    ||||| |    |||| ||  ||||  | |||||||||| ||||||||||||||||||||| |||||||| ||||||  | |||||||   ||| ||||||    
T  12843020 caccataagatcctctctgagggcgtcgccagaaaaaataaggtcattccgggaagtccaaatggtccagataacaaaatgccaaaccagaagcaaacct 12843119  T
Q  425 attctaacacgcttccccctacctaaccccgtaaaggaaaggaac 469  Q
    || ||||| | ||| ||||  ||||| ||| ||||  ||||||||    
T  12843120 atcctaactctctttccccctcctaagcccataaaataaaggaac 12843164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 233 - 332
Target Start/End: Original strand, 24065097 - 24065196
Alignment:
Q  233 aggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacag 332  Q
    |||||||| || ||||||||  ||||| |  | ||| ||||||||||| ||||||||| |||||||||||| | |||||||||| |||||||||||||||    
T  24065097 aggacgggttgtacctcccattcataataacaacaggaactagcagggtacttagccatgaaccacttccaggttaagagtttcactctatccaccacag 24065196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 459
Target Start/End: Original strand, 48309657 - 48309846
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtc 369  Q
    ||||||||||  |||||||| ||||| |||||||||||||||||||| ||||||||||||| | | |||| |   |    ||||||| ||| | ||||||    
T  48309657 aactagcaggaaacttagcccggaacgacttccaagctaagagtttcactctatccaccactggctcctctcggagtaagccaccagcaaagataaggtc 48309756  T
Q  370 attccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaa 459  Q
    |||| |||| |  || |||||||||||||||  | ||||||||  ||| |||||||  ||||| | ||||||||  |||||||| |||||    
T  48309757 attctgggatgctcaaatggtccaaataacaatatgccaaacaagaagcaaacctaacctaactctcttcccccctcctaaccctgtaaa 48309846  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 4866838 - 4866794
Alignment:
Q  271 actagcagggcacttagccaggaaccacttccaagctaagagttt 315  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  4866838 actagcaaggcacttagccaggaaccacttccaagctaagagttt 4866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 458
Target Start/End: Original strand, 44616698 - 44616887
Alignment:
Q  273 tagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaa----caaggt 368  Q
    ||||| ||| |||||||| || |||||| ||||||||||| ||| |||||||| ||| || | |||||| | |||| |  ||||||||||     |||||    
T  44616698 tagcaaggcccttagccatgagccacttacaagctaagagcttctctctatccgccataggctcctcacgaagggcgcttccagaaaaaaaaataaaggt 44616797  T
Q  369 cattccgggaagtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaa 458  Q
    |||||| | | ||||||||| ||||||||||| || || ||||    || ||||||| |||||| |||||||||| |||||| |||||||    
T  44616798 cattccagcacgtccagatgatccaaataacaacaggcaaaaccaggagcaaacctaatctaactcgcttccccccacctaagcccgtaa 44616887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 272 - 411
Target Start/End: Complemental strand, 41650583 - 41650444
Alignment:
Q  272 ctagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcat 371  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || | | | || |||||||||||||  | |||||    
T  41650583 ctagcagagcacttagccaggaaccacttccaagctaagagtttcgctctatccaccacatacacttctccaagagcgccaccagaaaaaatcaagtcat 41650484  T
Q  372 tccgggaagtccagatggtccaaataacagcacgccaaac 411  Q
    |  |||| ||||| ||||||||||| |||||| |||||||    
T  41650483 tttgggacgtccaaatggtccaaatgacagcatgccaaac 41650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 287 - 517
Target Start/End: Original strand, 3465354 - 3465579
Alignment:
Q  287 gccaggaaccacttccaagctaagagtttcgctctatccaccacagacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccaga 386  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||| |||| | |  ||  ||||||||||||| |||||| || | ||| ||| |||    
T  3465354 gccaagaaacacttccaagctaagagtttcgctctatccaccaaagactcctctcgaaaggtgccaccagaaaaaataaggtcgtttctggatgtctaga 3465453  T
Q  387 tggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaaggaaaggaactgccgggctaaacctaa 486  Q
    |||||||||||||| || | |||||  | ||||||||||  ||||||| |||||||| |||||| ||||| |||||     |||||||| ||| ||| |     
T  3465454 tggtccaaataacaacatgtcaaacgatgagtaaacctagcctaacactcttccccc-acctaatcccgtgaagga----cactgccggactagacccat 3465548  T
Q  487 agggatcacaaactcccaccccaaccaccta 517  Q
    |||   |||||||||||||||||||||||||    
T  3465549 aggagacacaaactcccaccccaaccaccta 3465579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 231 - 400
Target Start/End: Original strand, 27639444 - 27639613
Alignment:
Q  231 aaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccaccac 330  Q
    |||||||||| ||||||||| || ||| | | | |||  |||||||||| || ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  27639444 aaaggacgggttgcacctcctactcatgataagtgcaagaactagcaggacatttagccatgaaccacttccaagctaagaattttgctctatccaccac 27639543  T
Q  331 agacccctcactatgggcaccaccagaaaaaacaaggtcattccgggaagtccagatggtccaaataaca 400  Q
    || |  |||||||||||  ||||||| ||| | || ||||||   | |||||||||||||||||||||||    
T  27639544 agtctgctcactatgggtgccaccagcaaacataaagtcatttatgtaagtccagatggtccaaataaca 27639613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 33862027 - 33861926
Alignment:
Q  224 tgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctat 323  Q
    ||||| ||||||||||||| |||||||||| ||| ||| |||||| ||||| |||||||||||||| ||| |||||||||||| || |||||| ||||||    
T  33862027 tgccagcaaaggacgggctacacctcccactcatgaaaagagcaggaactaccagggcacttagccgggagccacttccaagccaa-agtttcactctat 33861929  T
Q  324 cca 326  Q
    |||    
T  33861928 cca 33861926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 16154585 - 16154664
Alignment:
Q  380 gtccagatggtccaaataacagcacgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaa 459  Q
    ||||| ||||||||||||| |||| |||||| |  ||| |||||||  ||||| | ||||||||| ||||||||||||||    
T  16154585 gtccaaatggtccaaataatagcatgccaaataagaagcaaacctaacctaactctcttcccccttcctaaccccgtaaa 16154664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 39774337 - 39774290
Alignment:
Q  364 aaggtcattccgggaagtccagatggtccaaataacagcacgccaaac 411  Q
    |||||| |||||||| ||||||||| |||||||||||| |||||||||    
T  39774337 aaggtcgttccgggacgtccagatgatccaaataacagaacgccaaac 39774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 331
Target Start/End: Original strand, 18408 - 18521
Alignment:
Q  218 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaaactagcagggcacttagccaggaaccacttccaagctaagagtttcg 317  Q
    ||||| |||||||| || ||||| |||||||||||| ||| | | | |||| ||||||||||||||||||||  ||| ||||| ||| ||| ||||||||    
T  18408 taccgctgccaacacagaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagcccagaatcactttcaaactatgagtttcg 18507  T
Q  318 ctctatccaccaca 331  Q
    ||||||||||||||    
T  18508 ctctatccaccaca 18521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 83252 - 83311
Alignment:
Q  270 aactagcagggcacttagccaggaaccacttccaagctaagagtttcgctctatccacca 329  Q
    |||||||||| ||||| | || ||||||||||||||||||||||||  || |||||||||    
T  83252 aactagcaggacacttcggcatgaaccacttccaagctaagagtttgactttatccacca 83311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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