View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11747_low_8 (Length: 517)

Name: NF11747_low_8
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11747_low_8
NF11747_low_8
[»] chr1 (29 HSPs)
chr1 (17-353)||(2020466-2020823)
chr1 (159-401)||(2011164-2011407)
chr1 (170-357)||(2012706-2012893)
chr1 (189-397)||(2007182-2007391)
chr1 (254-491)||(3341866-3342107)
chr1 (168-397)||(1793412-1793642)
chr1 (183-370)||(3379468-3379655)
chr1 (178-366)||(4334124-4334312)
chr1 (168-393)||(3362433-3362659)
chr1 (191-397)||(3373417-3373624)
chr1 (315-487)||(3349968-3350133)
chr1 (35-140)||(2007499-2007604)
chr1 (186-366)||(4322244-4322424)
chr1 (261-393)||(2947732-2947864)
chr1 (317-393)||(9809855-9809931)
chr1 (78-153)||(2011471-2011548)
chr1 (332-393)||(9820652-9820713)
chr1 (430-490)||(9809779-9809839)
chr1 (429-489)||(9818300-9818360)
chr1 (183-332)||(6600951-6601100)
chr1 (52-128)||(1793701-1793777)
chr1 (299-381)||(3193375-3193457)
chr1 (299-381)||(3202193-3202275)
chr1 (299-381)||(3211030-3211112)
chr1 (307-381)||(3217838-3217912)
chr1 (44-105)||(2013019-2013080)
chr1 (430-490)||(9820577-9820635)
chr1 (183-235)||(4332673-4332725)
chr1 (344-393)||(9818235-9818284)
[»] chr4 (1 HSPs)
chr4 (183-381)||(21238209-21238407)
[»] chr2 (3 HSPs)
chr2 (173-389)||(20953689-20953906)
chr2 (253-398)||(20924141-20924287)
chr2 (173-367)||(20935174-20935368)
[»] chr5 (1 HSPs)
chr5 (168-390)||(17970486-17970708)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 2020823 - 2020466
Alignment:
Q  17 atattgaacccaacgcataacttctgtaggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtact 116  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2020823 atattgaacccaacgcataacttctgcaggcaatcgtaactcaagtgtacaagttttagaaactaacttccaatactaaactgggaactttaaatgtact 2020724  T
Q  117 aaacaaatacttaacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaag---------------------taaatgagtactc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||    
T  2020723 aaacaaatacttaacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaagtaaagaaaagtcaagtcaaagtaaatgagtactc 2020624  T
Q  196 acaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaacaaaagat 295  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| ||||||    
T  2020623 acaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaagtcatagaagtttatactaaaccaaagat 2020524  T
Q  296 atgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaata 353  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  2020523 atgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaata 2020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 159 - 401
Target Start/End: Complemental strand, 2011407 - 2011164
Alignment:
Q  159 cagcaaataaaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatt 258  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||||||||||||||    
T  2011407 cagcaaagaaaagtcaattcaaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatt 2011308  T
Q  259 tccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaa 358  Q
    |||||||||||||||||||||||||||||| | ||| |  |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||     
T  2011307 tccttcaactcattgaagtttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgat 2011208  T
Q  359 gcaaaacaggagaattactct-aatcagaatataatgtttcaaa 401  Q
    | | ||| | | | || |||| ||||||||||||||||||||||    
T  2011207 gtacaacggaaaatttgctctgaatcagaatataatgtttcaaa 2011164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 170 - 357
Target Start/End: Complemental strand, 2012893 - 2012706
Alignment:
Q  170 agtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactc 269  Q
    |||||||  ||| ||||||||||||||||||||| | || || |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||    
T  2012893 agtcaagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtc 2012794  T
Q  270 attgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactga 357  Q
     | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2012793 gtagaagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactga 2012706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 189 - 397
Target Start/End: Complemental strand, 2007391 - 2007182
Alignment:
Q  189 agtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaac 288  Q
    ||||||||||||||| | || || |||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |||    
T  2007391 agtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcatagaagtttatactaaac 2007292  T
Q  289 aaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactct-aatcagaa 387  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| | | ||||  | |||| |||| ||||||||    
T  2007291 caaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgtacaacataaaaatttctctaaatcagaa 2007192  T
Q  388 tataatgttt 397  Q
    ||||||||||    
T  2007191 tataatgttt 2007182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 254 - 491
Target Start/End: Complemental strand, 3342107 - 3341866
Alignment:
Q  254 aaatttccttcaactcattgaagtttatactta-acaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 352  Q
    |||||| |||||| |||||||||||||| |||| || ||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  353 actgaagcaaaacaggagaattactctaatcagaatataatg-tttcaaaacaaacagtataaggcaagtcact--ttgagtcaaaacatatcaagagtt 449  Q
    ||||| |||||||| ||||||  ||||||||||||||||||| ||| ||||| ||||| |||||| | ||||||  |  |||  ||||||||| ||||||    
T  3342008 actgaggcaaaacaagagaatctctctaatcagaatataatgtttttaaaactaacagcataaggaaggtcactgctacagttgaaacatatcgagagtt 3341909  T
Q  450 gcatacacattattc-tggttcattataaaatagtagggggtt 491  Q
    ||||||||| ||||| |||||||||||||| |  |||||||||    
T  3341908 gcatacacagtattcttggttcattataaatttctagggggtt 3341866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 168 - 397
Target Start/End: Complemental strand, 1793642 - 1793412
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  ||| |||||||| |||||| ||||| | ||||| |||||||||||| | |||||| ||||| |||||||||| |||||||||||||||     
T  1793642 aaagtcaagccaaactaaatgagcactcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaag 1793543  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacag 367  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||| ||  |||||||| ||||||||  ||||||||||| | || ||    
T  1793542 tcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaag 1793443  T
Q  368 gagaattactct-aatcagaatataatgttt 397  Q
     | |||| || | ||||||||||||||||||    
T  1793442 aaaaattgctataaatcagaatataatgttt 1793412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 183 - 370
Target Start/End: Complemental strand, 3379655 - 3379468
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    ||||| |||||||||||||||||| | ||||||||| ||||| | |||||||| ||  || || ||||  ||||||||||||||  ||||||||||||||    
T  3379655 taaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattgaagtttata 3379556  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggag 370  Q
    | |||  |||||||  ||||||  |||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||    
T  3379555 cataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactgaagcaaaacaggag 3379468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 178 - 366
Target Start/End: Original strand, 4334124 - 4334312
Alignment:
Q  178 taaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagt 277  Q
    |||| |||| ||||||||||| |||||| || ||||| ||| ||||||| ||||||||||||||| ||||| |  |||||||||| ||  | || |||||    
T  4334124 taaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcgaagt 4334223  T
Q  278 ttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaaca 366  Q
    ||||  ||||  ||||| |  |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  4334224 ttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcataaca 4334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 168 - 393
Target Start/End: Complemental strand, 3362659 - 3362433
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  ||| |||| |||||||||||| |||||| | ||||  ||||||||||| |||| ||| ||  || |||||||   |||||| ||||||     
T  3362659 aaagtcaagccaaactaaacgagtactcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttcaag 3362560  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacag 367  Q
    |||| ||||| ||| | |||  |||||| | | ||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  3362559 tcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcagccaaatactgaagcaaaacag 3362460  T
Q  368 gagaattactct-aatcagaatataat 393  Q
     ||||  ||||| ||||||||||||||    
T  3362459 aagaacaactctaaatcagaatataat 3362433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 191 - 397
Target Start/End: Complemental strand, 3373624 - 3373417
Alignment:
Q  191 tactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaacaa 290  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||  || ||||||| ||||||||||||||| |||||||||||||| | |||  |    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataagga 3373525  T
Q  291 aagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactct-aatcagaata 389  Q
    ||| |    |||  | |||||||||| |||||||||||||||||||  | ||||||||||||||| || ||||| || ||||   | || ||||||||||    
T  3373524 aagctcacataggctgatacaaggtgcaggaagctttactggcacatcatctgcagccaaatactaaaacaaaatagaagaacgtcactaaatcagaata 3373425  T
Q  390 taatgttt 397  Q
    ||||||||    
T  3373424 taatgttt 3373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 315 - 487
Target Start/End: Complemental strand, 3350133 - 3349968
Alignment:
Q  315 tgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaatcagaatataat-gtttcaaaacaaacagtata 413  Q
    ||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||  |||  |||| || || |||    
T  3350133 tgtaggaagttttgctggcacaatacctgcagccaaatactaaaccaaaacaggagaatgtctctaatcagaatataatatttttgaaactaagagcata 3350034  T
Q  414 aggcaagtcactttgagtcaaaacatatcaagagttgcatacacattattctggttcattataaaatagtaggg 487  Q
    |||        |  |||||||||||||||||||||||||||||||||||   ||||||||||||| | ||||||    
T  3350033 agg--------tgagagtcaaaacatatcaagagttgcatacacattatggaggttcattataaatttgtaggg 3349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 2007604 - 2007499
Alignment:
Q  35 aacttctgtaggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtactaaacaaatacttaacgca 134  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||| ||| | |||||| |||||||||| |||    
T  2007604 aacttctgcaggcaatcgtaactcaagtgtacaagttttagaaaataatttccaatactggattgggaacttgaaaggcactaaaaaaatacttaaagca 2007505  T
Q  135 gaaaaa 140  Q
     |||||    
T  2007504 aaaaaa 2007499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 366
Target Start/End: Original strand, 4322244 - 4322424
Alignment:
Q  186 atgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatactt 285  Q
    ||||||||||||| ||||||||| |||   |||||| |||  ||||| || || ||| ||||||||  ||||||||  ||  | || ||||||||  |||    
T  4322244 atgagtactcacatatatttctaatttcagaagattgggttagcttcggagcaaacaaagagcagtcaaaatttccgccatgttatcgaagtttacgctt 4322343  T
Q  286 aacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaaca 366  Q
    ||  ||||| |  |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  4322344 aaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 4322424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 2947732 - 2947864
Alignment:
Q  261 cttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagc 360  Q
    |||||| |||||||||||||| |  ||  ||| | || ||||||| | |||  |||||||||| ||| ||||||| ||||||| ||||||||||| ||||    
T  2947732 cttcaagtcattgaagtttatccacaagcaaatagatcttagattgacacacagtgtaggaagtttttctggcacgatacctgtagccaaatactaaagc 2947831  T
Q  361 aaaacaggagaattactctaatcagaatataat 393  Q
    |||||||||||||  ||||||||||||||||||    
T  2947832 aaaacaggagaatgtctctaatcagaatataat 2947864  T

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Target: chr1; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 9809931 - 9809855
Alignment:
Q  317 taggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaatcagaatataat 393  Q
    ||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||  ||||||||| ||||||||    
T  9809931 taggaagttttgctggcacaatacctgcagccaaatattgaagcaaaacaagagaatgtctctaatcaaaatataat 9809855  T

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Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 2011548 - 2011471
Alignment:
Q  78 actaacttccaatacta--gactgggaactttaaatgtactaaacaaatacttaacgcagaaaaaggtttgcgatttc 153  Q
    |||||||||||||||||  || || |||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  2011548 actaacttccaatactatagattgtgaactttaaaggcactaaacaaatacttaacgcagaaaaaagtttgcgatttc 2011471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 9820713 - 9820652
Alignment:
Q  332 gcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaatcagaatataat 393  Q
    |||||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  9820713 gcacaatacctgcagccaaatactgaagcaaaacaaaagaatgtctctaatcagaatataat 9820652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 9809839 - 9809779
Alignment:
Q  430 gtcaaaacatatcaagagttgcatacacattattctggttcattataaaatagtagggggt 490  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||    
T  9809839 gtcaaaacatatcaagagttgcttacacattattgtggttcattataaatttgtagggggt 9809779  T

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Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 489
Target Start/End: Original strand, 9818300 - 9818360
Alignment:
Q  429 agtcaaaacatatcaagagttgcatacacattattctggttcattataaaatagtaggggg 489  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||    
T  9818300 agtcaaaacatatcaagagtttcatacacattattgtggttcattataaatttgtaggggg 9818360  T

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Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 332
Target Start/End: Original strand, 6600951 - 6601100
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    ||||| ||||||||| |||||||| |||| |   |||||||||| ||||||||| |  || ||||||| ||||||||||||  | |||| |||||||||     
T  6600951 taaataagtactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatg 6601050  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactgg 332  Q
    | ||   |||||||  |||||| ||| ||||| |||||||||||||||||    
T  6601051 cgtatggaaagataacttagatcaatgcaaggggtaggaagctttactgg 6601100  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1793777 - 1793701
Alignment:
Q  52 gtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtactaaacaaatactt 128  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| ||  ||||| ||| | |||| ||||||||||    
T  1793777 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 1793701  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 3193375 - 3193457
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaa 381  Q
    ||||||| |||||| |||| ||||||||||| ||||||  ||||||| ||||||||| ||||| || || ||||| |||||||    
T  3193375 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagcacaatagaagaatgactctaa 3193457  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 3202193 - 3202275
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaa 381  Q
    ||||||| |||||| |||| ||||||||||| ||||||  ||||||| ||||||||| ||||| || || ||||| |||||||    
T  3202193 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagcacaatagaagaatgactctaa 3202275  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 3211030 - 3211112
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaa 381  Q
    ||||||| |||||| |||| ||||||||||| ||||||  ||||||| ||||||||| ||||| || || ||||| |||||||    
T  3211030 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagcacaatagaagaatgactctaa 3211112  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 3217838 - 3217912
Alignment:
Q  307 atacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaa 381  Q
    ||||||||||| ||||| ||||| ||||||  ||||||| ||||||||||||||| || || ||||| |||||||    
T  3217838 atacaaggtgtcggaagttttaccggcacatcacctgcatccaaatactgaagcacaatagaagaatgactctaa 3217912  T

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Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 2013080 - 2013019
Alignment:
Q  44 aggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaact 105  Q
    ||||||| ||| | |||||| |||| ||||||||||||||||||||||||||| | ||||||    
T  2013080 aggcaattgtagctcaagtgcacaaattttagaaactaacttccaatactagattaggaact 2013019  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 9820635 - 9820577
Alignment:
Q  430 gtcaaaacatatcaagagttgcatacacattattctggttcattataaaatagtagggggt 490  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||||||| | |||||||||    
T  9820635 gtcaaaacata--aagagttgcatgcacattattgtggttcattataaatttgtagggggt 9820577  T

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Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 4332673 - 4332725
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctga 235  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||| ||||||||    
T  4332673 taaatgagtactcacagatatttctacttttcgaagattaggtgagcttctga 4332725  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 9818235 - 9818284
Alignment:
Q  344 cagccaaatactgaagcaaaacaggagaattactctaatcagaatataat 393  Q
    |||||||||| |||||||||||| ||||||  ||||||||| ||||||||    
T  9818235 cagccaaatattgaagcaaaacaagagaatgtctctaatcaaaatataat 9818284  T

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Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 183 - 381
Target Start/End: Complemental strand, 21238407 - 21238209
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    |||| ||||||||||| |||||| || ||||   |||||||||| |||||||| ||  || |||||||  || ||||||||||| ||||||||||||||     
T  21238407 taaacgagtactcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatg 21238308  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaattactctaa 381  Q
     ||||||||||||   |||||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||| |||||||| ||||    
T  21238307 tttaacaaaagatggcttagatgaatacaaggtgtaggaagctttactggaacgacacctgcagccaaatactgaagcagaacagaagaattaccctaa 21238209  T

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Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 173 - 389
Target Start/End: Complemental strand, 20953906 - 20953689
Alignment:
Q  173 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 272  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  ||||||||||| |  |  |     
T  20953906 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtc 20953807  T
Q  273 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacaggagaa 372  Q
    ||||||||| | |||  |||||||  |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| | ||    
T  20953806 gaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcacaccagaaaaa 20953707  T
Q  373 ttactct-aatcagaata 389  Q
    | ||||| ||||||||||    
T  20953706 tgactctaaatcagaata 20953689  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 253 - 398
Target Start/End: Complemental strand, 20924287 - 20924141
Alignment:
Q  253 gaaatttccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 352  Q
    ||||||||| |||| || ||||||||||  | ||   ||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||    
T  20924287 gaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccacacctgcagccaaat 20924188  T
Q  353 actgaagcaaaacaggagaattactct-aatcagaatataatgtttc 398  Q
    ||||||||||||||| ||| | ||||| |||||||||||||||||||    
T  20924187 actgaagcaaaacagaagagtgactctaaatcagaatataatgtttc 20924141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 173 - 367
Target Start/End: Complemental strand, 20935368 - 20935174
Alignment:
Q  173 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 272  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  |||||||||||||| ||||     
T  20935368 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatc 20935269  T
Q  273 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacag 367  Q
    ||||||||| || ||  ||||||   ||||||  |||||||||||||||||||||  ||||| || |||||||| || |||||||||| ||||||    
T  20935268 gaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactgaagcgaaacag 20935174  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 390
Target Start/End: Complemental strand, 17970708 - 17970486
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  |||||||||||||||||||||  |||  || | ||| ||||||||||| |||| ||| || |||  || ||   ||||||||| ||||     
T  17970708 aaagtcaagccaaagtaaatgagtactcacaatcattcttaatctttgaagattaggtgagcttttgagcaaacaaggaacaaccgaaatttccctcaag 17970609  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaagcaaaacag 367  Q
    |||||||| |||||    || | |||| |  | |||| ||||  |||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  17970608 tcattgaaatttatttccaaaagaagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatactaaagcaaaacag 17970509  T
Q  368 gagaattactctaatcagaatat 390  Q
     |||||| || |||| |||||||    
T  17970508 aagaattgctttaataagaatat 17970486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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