View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11747_low_9 (Length: 470)
Name: NF11747_low_9
Description: NF11747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11747_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 43900964 - 43901433
Alignment:
| Q |
1 |
atttattggggtcaaaataacaatgagggtaccctaacagaaacatgtgcaaaaggaaactacaacaactactcctatgtaatcatagcttttcttaaca |
100 |
Q |
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| T |
43900964 |
atttattggggtcaaaataacaatgagggtaccctaacagaaacatgtgcaaaaggaaactacaacaactactcctatgtaatcatagcttttcttaaca |
43901063 |
T |
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| Q |
101 |
aatttgggaatggaacaacacctgaaatcaacttagcagatcattgtgacccttcttccaatgattgcacaatgttaagcacacacattaagaattgcca |
200 |
Q |
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| T |
43901064 |
aatttgggaatggaacaacacctgaaatcaacttagcagatcattgtgacccttcttccaatgattgcacaatgttaagcacacacattaagaattgcca |
43901163 |
T |
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| Q |
201 |
aatgaaaaggatcaaagtcttgctttcaattggcggagcagatggagaatatggtttaggttccactgatgatgcaaaaaatgtttctgattacttgtgg |
300 |
Q |
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| T |
43901164 |
aatgaaaaggatcaaagtcttgctttcaattggcggagcagatggagaatatggtttaggttccactgatgatgcaaaaaatgtttctgattacttgtgg |
43901263 |
T |
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| Q |
301 |
aacaagtttttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatatcgnnnnnnnctccaaaggaaaacaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
43901264 |
aacaagtttttgggtggaaattcatcttcacgtccatttggcgatgctatattagatggtattgattttgatattgaaaaaaactccaaaggaaaacaaa |
43901363 |
T |
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| Q |
401 |
accaacaacattgggaagaacctgcacgttttcttaagtcaagtaacacttcaacacaaaatgtttactt |
470 |
Q |
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| T |
43901364 |
accaacaacattgggaagaacttgcacgttttcttaagtcacgtaacacttcaacacaaaatgtttactt |
43901433 |
T |
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