View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11748_high_1 (Length: 455)

Name: NF11748_high_1
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11748_high_1
NF11748_high_1
[»] chr7 (30 HSPs)
chr7 (11-437)||(47527853-47528279)
chr7 (166-299)||(27481352-27481485)
chr7 (183-338)||(3610758-3610914)
chr7 (197-299)||(9527148-9527250)
chr7 (169-248)||(22388013-22388092)
chr7 (48-162)||(47544261-47544376)
chr7 (167-285)||(31341074-31341192)
chr7 (225-267)||(35007542-35007584)
chr7 (226-299)||(36874023-36874096)
chr7 (210-299)||(49060463-49060552)
chr7 (220-299)||(5373158-5373237)
chr7 (196-235)||(6396498-6396537)
chr7 (195-242)||(20476714-20476761)
chr7 (194-249)||(22204417-22204471)
chr7 (194-249)||(22230268-22230322)
chr7 (224-299)||(48157178-48157253)
chr7 (194-248)||(941451-941505)
chr7 (213-263)||(4591468-4591518)
chr7 (210-248)||(27389306-27389344)
chr7 (220-262)||(35808999-35809041)
chr7 (195-264)||(1431401-1431470)
chr7 (220-277)||(2894750-2894807)
chr7 (195-248)||(23721409-23721462)
chr7 (210-299)||(44241783-44241871)
chr7 (182-299)||(47003982-47004099)
chr7 (184-244)||(504129-504189)
chr7 (220-248)||(2223081-2223109)
chr7 (227-299)||(5006567-5006639)
chr7 (220-300)||(33894556-33894635)
chr7 (226-298)||(40009409-40009481)
[»] chr6 (30 HSPs)
chr6 (183-304)||(31420854-31420975)
chr6 (182-285)||(8349736-8349839)
chr6 (195-299)||(2514610-2514714)
chr6 (194-277)||(9027484-9027567)
chr6 (221-298)||(10452419-10452496)
chr6 (196-304)||(28660137-28660248)
chr6 (220-299)||(4006647-4006726)
chr6 (194-261)||(9732383-9732450)
chr6 (177-247)||(3737959-3738029)
chr6 (210-292)||(7148590-7148671)
chr6 (182-248)||(31461573-31461639)
chr6 (231-354)||(281850-281974)
chr6 (205-290)||(3169312-3169397)
chr6 (196-289)||(7351676-7351769)
chr6 (194-299)||(7354111-7354216)
chr6 (195-248)||(31668794-31668847)
chr6 (211-299)||(34429748-34429836)
chr6 (194-264)||(27727166-27727237)
chr6 (223-298)||(33500540-33500615)
chr6 (204-251)||(33823386-33823433)
chr6 (209-264)||(34405027-34405082)
chr6 (233-299)||(1402942-1403008)
chr6 (168-229)||(14340931-14340992)
chr6 (182-299)||(32975873-32975990)
chr6 (183-292)||(33068626-33068735)
chr6 (220-304)||(323744-323828)
chr6 (228-264)||(781326-781362)
chr6 (194-242)||(1497887-1497935)
chr6 (212-264)||(24836292-24836344)
chr6 (167-247)||(31828912-31828992)
[»] chr8 (35 HSPs)
chr8 (168-298)||(4558679-4558809)
chr8 (197-354)||(26716440-26716596)
chr8 (182-299)||(12972751-12972868)
chr8 (195-299)||(31884502-31884606)
chr8 (182-262)||(44617882-44617962)
chr8 (199-292)||(33209285-33209378)
chr8 (168-248)||(43208242-43208322)
chr8 (228-299)||(16210944-16211015)
chr8 (194-264)||(34563157-34563227)
chr8 (219-292)||(1112785-1112858)
chr8 (199-300)||(4763830-4763931)
chr8 (194-299)||(35869744-35869849)
chr8 (211-299)||(39551267-39551355)
chr8 (182-261)||(5226497-5226576)
chr8 (182-237)||(11415049-11415104)
chr8 (184-247)||(27320213-27320276)
chr8 (210-344)||(38561649-38561784)
chr8 (220-294)||(3945207-3945281)
chr8 (233-354)||(39561543-39561665)
chr8 (182-264)||(42508656-42508738)
chr8 (168-233)||(6875605-6875670)
chr8 (210-291)||(6918245-6918326)
chr8 (210-299)||(11056725-11056814)
chr8 (226-299)||(13459585-13459657)
chr8 (195-248)||(21270180-21270233)
chr8 (226-299)||(42597340-42597413)
chr8 (228-264)||(1470949-1470985)
chr8 (216-248)||(5290570-5290602)
chr8 (195-345)||(8062431-8062583)
chr8 (182-244)||(8187251-8187314)
chr8 (208-264)||(10939328-10939384)
chr8 (181-241)||(11494211-11494271)
chr8 (198-262)||(14949799-14949863)
chr8 (220-339)||(29973014-29973134)
chr8 (204-264)||(40356788-40356848)
[»] chr1 (26 HSPs)
chr1 (59-142)||(36007584-36007667)
chr1 (196-287)||(27140391-27140485)
chr1 (219-296)||(15360826-15360903)
chr1 (227-299)||(1432455-1432527)
chr1 (201-299)||(6074389-6074486)
chr1 (226-266)||(172280-172320)
chr1 (182-298)||(30259546-30259662)
chr1 (226-300)||(836396-836470)
chr1 (182-264)||(23895231-23895313)
chr1 (198-248)||(26679185-26679235)
chr1 (168-245)||(30237857-30237935)
chr1 (210-264)||(40357979-40358033)
chr1 (226-264)||(49692143-49692181)
chr1 (211-252)||(4256604-4256645)
chr1 (195-291)||(4276702-4276799)
chr1 (183-248)||(24857623-24857688)
chr1 (229-298)||(38578469-38578538)
chr1 (226-266)||(3052774-3052814)
chr1 (220-248)||(5160342-5160370)
chr1 (220-304)||(5756739-5756823)
chr1 (220-264)||(33759503-33759547)
chr1 (227-299)||(37842413-37842485)
chr1 (254-294)||(40833898-40833938)
chr1 (204-248)||(46712290-46712334)
chr1 (183-299)||(49557037-49557153)
chr1 (196-248)||(52013806-52013858)
[»] chr5 (31 HSPs)
chr5 (185-248)||(29588778-29588841)
chr5 (194-299)||(8472016-8472121)
chr5 (167-264)||(20982228-20982325)
chr5 (169-265)||(26516180-26516276)
chr5 (227-316)||(34245664-34245754)
chr5 (196-264)||(6738500-6738568)
chr5 (206-278)||(13224348-13224420)
chr5 (194-245)||(29115325-29115376)
chr5 (220-294)||(35135725-35135799)
chr5 (226-354)||(18704038-18704166)
chr5 (202-299)||(32059647-32059743)
chr5 (184-277)||(41052787-41052880)
chr5 (216-264)||(7096220-7096268)
chr5 (199-263)||(10391265-10391329)
chr5 (195-247)||(14961852-14961904)
chr5 (385-425)||(34198525-34198565)
chr5 (194-289)||(41819518-41819614)
chr5 (183-238)||(11457019-11457074)
chr5 (226-352)||(16889674-16889801)
chr5 (226-264)||(11054125-11054163)
chr5 (210-264)||(12407754-12407807)
chr5 (194-244)||(27104527-27104577)
chr5 (194-264)||(27106016-27106086)
chr5 (243-304)||(2933704-2933765)
chr5 (235-304)||(14295454-14295523)
chr5 (211-304)||(19177403-19177496)
chr5 (227-345)||(37690647-37690767)
chr5 (184-244)||(2569815-2569875)
chr5 (220-300)||(10907312-10907392)
chr5 (182-262)||(33961598-33961678)
chr5 (168-248)||(39257495-39257575)
[»] chr4 (25 HSPs)
chr4 (208-354)||(30207573-30207719)
chr4 (167-270)||(485961-486064)
chr4 (226-300)||(50745939-50746013)
chr4 (194-299)||(24443945-24444050)
chr4 (162-299)||(24929368-24929505)
chr4 (205-298)||(53943525-53943617)
chr4 (220-284)||(7749155-7749219)
chr4 (182-246)||(21043325-21043389)
chr4 (194-246)||(46860276-46860328)
chr4 (220-264)||(51044552-51044596)
chr4 (169-299)||(8422897-8423025)
chr4 (220-291)||(21593078-21593148)
chr4 (194-264)||(4471078-4471148)
chr4 (182-248)||(24936206-24936271)
chr4 (226-300)||(30338649-30338723)
chr4 (194-248)||(41050603-41050657)
chr4 (198-288)||(44319861-44319950)
chr4 (204-345)||(54325048-54325190)
chr4 (220-277)||(7731703-7731760)
chr4 (183-260)||(8703719-8703796)
chr4 (220-277)||(20907106-20907163)
chr4 (226-299)||(22471270-22471343)
chr4 (183-248)||(23525674-23525739)
chr4 (196-248)||(54986331-54986383)
chr4 (227-299)||(55870399-55870471)
[»] chr3 (25 HSPs)
chr3 (200-291)||(38462194-38462285)
chr3 (196-299)||(43116486-43116589)
chr3 (194-239)||(29094288-29094333)
chr3 (197-297)||(32703048-32703148)
chr3 (167-264)||(49772761-49772860)
chr3 (220-306)||(20192657-20192743)
chr3 (216-345)||(36646393-36646523)
chr3 (226-354)||(40122755-40122883)
chr3 (220-299)||(42084309-42084388)
chr3 (195-298)||(36139786-36139889)
chr3 (386-425)||(41848642-41848681)
chr3 (228-299)||(48397587-48397658)
chr3 (220-262)||(2304336-2304378)
chr3 (194-248)||(3015957-3016011)
chr3 (197-263)||(20173982-20174048)
chr3 (195-289)||(41028919-41029013)
chr3 (229-299)||(44061081-44061151)
chr3 (224-277)||(2128331-2128384)
chr3 (195-248)||(13804696-13804749)
chr3 (195-248)||(20211030-20211083)
chr3 (160-233)||(21574365-21574438)
chr3 (240-340)||(43115010-43115110)
chr3 (183-248)||(48597698-48597763)
chr3 (220-264)||(21500873-21500917)
chr3 (305-345)||(31403166-31403206)
[»] chr2 (37 HSPs)
chr2 (208-263)||(10150676-10150731)
chr2 (201-299)||(35755560-35755658)
chr2 (226-299)||(5133711-5133784)
chr2 (183-299)||(10143068-10143184)
chr2 (194-246)||(13869206-13869258)
chr2 (196-264)||(34339032-34339100)
chr2 (182-264)||(33232037-33232117)
chr2 (220-353)||(41032958-41033087)
chr2 (182-248)||(42974247-42974313)
chr2 (195-245)||(43965242-43965292)
chr2 (234-299)||(9878740-9878805)
chr2 (199-248)||(29503190-29503239)
chr2 (195-247)||(11393765-11393817)
chr2 (195-247)||(11410426-11410478)
chr2 (226-297)||(31740019-31740091)
chr2 (197-264)||(1899810-1899877)
chr2 (220-291)||(18962104-18962175)
chr2 (165-299)||(4550655-4550789)
chr2 (210-248)||(9478222-9478260)
chr2 (198-248)||(15173437-15173487)
chr2 (220-290)||(28902010-28902080)
chr2 (199-261)||(38239647-38239709)
chr2 (210-264)||(44606181-44606235)
chr2 (196-245)||(5867303-5867352)
chr2 (211-248)||(29430680-29430717)
chr2 (182-291)||(33192088-33192197)
chr2 (195-248)||(33197348-33197401)
chr2 (195-248)||(3235491-3235546)
chr2 (385-425)||(3673913-3673953)
chr2 (220-264)||(5045250-5045294)
chr2 (220-248)||(13864583-13864611)
chr2 (168-248)||(15171131-15171211)
chr2 (168-236)||(21363914-21363981)
chr2 (220-264)||(25609729-25609773)
chr2 (226-298)||(32694151-32694223)
chr2 (220-300)||(36114580-36114660)
chr2 (385-425)||(41170714-41170754)
[»] scaffold0009 (1 HSPs)
scaffold0009 (84-158)||(101476-101550)
[»] scaffold0590 (1 HSPs)
scaffold0590 (182-264)||(1167-1249)
[»] scaffold0275 (1 HSPs)
scaffold0275 (182-264)||(2726-2808)
[»] scaffold0024 (1 HSPs)
scaffold0024 (194-299)||(27483-27588)
[»] scaffold0349 (1 HSPs)
scaffold0349 (194-264)||(5745-5816)
[»] scaffold0091 (1 HSPs)
scaffold0091 (182-261)||(5914-5993)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 47528279 - 47527853
Alignment:
Q  11 cagagaagaaaatgcagaagaaatggatctnnnnnnncatgcatgctgacctgtgtttcaagctcagttaaatgagcttgctttcttcgtcttgagcgtc 110  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528279 cagagaagaaaatgcagaagaaatggatctaaaaaaacatgcatgctgacctgtgtttcaagctcagttaaatgagcttgctttcttcgtcttgagcgtc 47528180  T
Q  111 tagctgattccctattagagagcatcctgaaaggcaatgtcattaggcattaggtactgtttgtataaaatacttaatcaagggcttatagcataaacac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47528179 tagctgattccctattagagagcatcctgaaaggcaatgtcattaggcattaggtactgtttgtgtaaaatacttaatcaagggcttatagcataaacac 47528080  T
Q  211 ttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaactatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528079 ttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaactatca 47527980  T
Q  311 tagagatttcatgggaataagctgaaaacagcttacagacatgtgttgtttccacgatctccctcaaataattacacaagtgtttttgttagtacataaa 410  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47527979 tagagatttcatgggaataagctgaaaacagcttacaggcatgtgttgtttccacgatctccctcaaataatttcacaagtgtttttgttagtacataaa 47527880  T
Q  411 ctcaaataagtcaatgtcaatctaaac 437  Q
    |||||||||||||||||||||||||||    
T  47527879 ctcaaataagtcaatgtcaatctaaac 47527853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 27481485 - 27481352
Alignment:
Q  166 actgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaa 265  Q
    |||||||| |||||  ||||||| | | ||||||||||||||   |||||||| |||||||||||||||||||||||||||||  ||||||||||  ||     
T  27481485 actgtttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaag 27481386  T
Q  266 ttcaactgtttttacataagctataagttgtttt 299  Q
    |  ||||||||  | |||||||||||||| ||||    
T  27481385 tcaaactgtttccatataagctataagttatttt 27481352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 3610914 - 3610758
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacat 282  Q
    |||||||||| | || || ||||||||||| | ||| ||||| |||||||||||||||||||| ||  || |||||||| ||    |||||||||   ||    
T  3610914 cttaatcaagcgattgtaccataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtat 3610815  T
Q  283 aagctataagttgtttttgt-aactatcatagagatttcatgggaataagctgaaaa 338  Q
    ||||||||||||||||| || ||||||| ||||||  | || | |||||||||||||    
T  3610814 aagctataagttgttttcgtaaactatcctagagagcttatagaaataagctgaaaa 3610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 9527250 - 9527148
Alignment:
Q  197 tatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgt 296  Q
    ||||| |||||||||||| ||||||||| |||| |||| ||||| |||||||  || |||| |||||| |  ||||||||| | |||| |||||||||||    
T  9527250 tatagtataaacacttatcatacaagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactataagttgt 9527151  T
Q  297 ttt 299  Q
    |||    
T  9527150 ttt 9527148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 22388092 - 22388013
Alignment:
Q  169 gtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||| |||||  ||||||| ||| ||||||| ||||||||||||| ||  ||||| ||||| |||||||||||||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataa 22388013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 47544376 - 47544261
Alignment:
Q  48 catgcatgctgacctgtgtttcaagctcagttaaatgagcttgctttcttcgtcttgagcgtctagctgattccctattagagagcatcctg-aaaggca 146  Q
    ||||||||| |||||||||||||||||||||    | ||||  ||||||   ||| || ||| ||||||||||||||||   |||||||||| |||||||    
T  47544376 catgcatgcagacctgtgtttcaagctcagtattcttagctatctttctatctctcgatcgtttagctgattccctattttggagcatcctgaaaaggca 47544277  T
Q  147 atgtcattaggcatta 162  Q
    ||||||| ||||||||    
T  47544276 atgtcataaggcatta 47544261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 31341074 - 31341192
Alignment:
Q  167 ctgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaat 266  Q
    ||||||| |||||  ||||||||||| |||||| |||||| | ||||| ||  || || ||||||||||||||||| |||||  || ||||||||||| |    
T  31341074 ctgtttggataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagt 31341173  T
Q  267 tcaactgtttttacataag 285  Q
      ||||| ||||| |||||    
T  31341174 caaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 35007542 - 35007584
Alignment:
Q  225 tttatgtataagctatttctataattaaggataaaataaaatt 267  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  35007542 tttatgtataagctatttctataactaaagataaaataaaatt 35007584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 36874096 - 36874023
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||||||  || ||||||||||| || || | ||||   |||||||||||||||||||    
T  36874096 ttatgtataagctatttctataagaaatgataaaataaatttgaattattttcttataagctataagttgtttt 36874023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 49060463 - 49060552
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||| |||| ||||||||||||||||||||||||  ||  |||||||||| |  || | |||||| |||||||||||||| ||||    
T  49060463 cttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttatttt 49060552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 5373158 - 5373237
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||||||||| |||||||||||||  || ||||||||||| | |||   |||||| ||||| |||||||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgtttt 5373237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 6396498 - 6396537
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataa 235  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  6396498 ttatagcataaaaaattattatacaagtgtttatgtataa 6396537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 20476761 - 20476714
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctattt 242  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| ||||    
T  20476761 cttataacataaactcttattatacaagcgtttatgtataagcaattt 20476714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 22204417 - 22204471
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataat 249  Q
    ||||||||||||||  ||||| ||||||||||||| |||||||||||||| |||||    
T  22204417 gcttatagcataaatgcttatcatacaagtgttta-gtataagctatttcaataat 22204471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 22230322 - 22230268
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataat 249  Q
    ||||||||||||||  ||||| ||||||||||||| |||||||||||||| |||||    
T  22230322 gcttatagcataaatgcttatcatacaagtgttta-gtataagctatttcaataat 22230268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 48157253 - 48157178
Alignment:
Q  224 gtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||  |||||||||||| || ||||||||||| |  || |||||| | ||||||||||| |||||||    
T  48157253 gtttatgtataacttatttctataataaaagataaaataaagtgaaattgttttaatataagctataatttgtttt 48157178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 941451 - 941505
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||| |||||| ||| |||||  ||| ||||||||||||||||||    
T  941451 gcttatagcataaaaacttataatataagtgcatatatataagctatttctataa 941505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 4591468 - 4591518
Alignment:
Q  213 attatacaagtgtttatgtataagctatttctataattaaggataaaataa 263  Q
    |||||| ||||||||||||||||||||| |||||||  || ||||||||||    
T  4591468 attatataagtgtttatgtataagctatctctataacaaaagataaaataa 4591518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 27389306 - 27389344
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  27389306 cttatcatataagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 35809041 - 35808999
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaata 262  Q
    |||||||||||||||||||||||||||||  || |||||||||    
T  35809041 aagtgtttatgtataagctatttctataacaaaagataaaata 35808999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 1431470 - 1431401
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||||   ||||| ||| ||||||||||||||||| |||||| ||||| ||  ||||||||||    
T  1431470 cttatagcataagtgcttatcatataagtgtttatgtataagttatttccataatgaaaaataaaataaa 1431401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 2894750 - 2894807
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    ||||||| |||||||||||||||||||||  || |||||| |||| || |||||||||    
T  2894750 aagtgttcatgtataagctatttctataacaaaagataaattaaagttgaactgtttt 2894807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 23721409 - 23721462
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||| ||||||||||||||| ||  ||||| |||||||||| ||||||||||||    
T  23721409 cttacagcataaacacttatcatcaaagtgcttatgtataaactatttctataa 23721462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 44241783 - 44241871
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||| |||||| |||||||||| |||||||||||  |  ||||||||||| || |||| |||||  |||| ||||||||||||||    
T  44241783 cttatcatataagtgtgtatgtataagttatttctataacaacagataaaataaagtt-aactatttttgtataacctataagttgtttt 44241871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 47003982 - 47004099
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| ||| |||||||||| |||   |||| ||| |||||||||| | ||||||||||||||||  |  ||||||||||| |  |||| |||||| |    
T  47003982 acttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttata 47004081  T
Q  282 taagctataagttgtttt 299  Q
    | | ||||||| ||||||    
T  47004082 tgaactataagctgtttt 47004099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 504129 - 504189
Alignment:
Q  184 ttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttct 244  Q
    ||||| ||| ||||||||||||| | | |||| |||||| |||||||||||||| ||||||    
T  504129 ttaattaagtgcttatagcataagctcctattttacaagcgtttatgtataagccatttct 504189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 2223081 - 2223109
Alignment:
Q  220 aagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||||||||||||||||||    
T  2223081 aagtgtttatgtataagctatttctataa 2223109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 5006639 - 5006567
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||||| ||||||  || ||||||||||| |  ||||||||| | ||||| ||||| |||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgtttt 5006567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 33894556 - 33894635
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    ||||| |||||||||||||||||||||||  || |||||||| || |  ||||||||| | ||||||| || |||||||||    
T  33894556 aagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagctttatgttgttttt 33894635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 40009409 - 40009481
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    ||||||||||||| ||| |||||  || || |||||||| || || ||||||| ||||| |||||||||||||    
T  40009409 ttatgtataagctgtttttataacaaaagacaaaataaagttaaattgtttttccataatctataagttgttt 40009481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 31420854 - 31420975
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacat 282  Q
    |||||| ||| | ||||||||||| || |||||||| |||||||||| ||||||||||||||||||| || | |||||||||||  |||| |||||| ||    
T  31420854 cttaattaagtgtttatagcataatcatttattatataagtgtttatttataagctatttctataataaatggtaaaataaaatcaaactatttttatat 31420953  T
Q  283 aagctataagttgtttttgtaa 304  Q
    ||| ||||||||||||| ||||    
T  31420954 aagatataagttgttttcgtaa 31420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 8349839 - 8349736
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| ||| ||||||||||||| ||||||| ||| |||||||| ||||||| |||||||| |||  || ||||||||||| || || |||||||| |    
T  8349839 acttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgtttttata 8349740  T
Q  282 taag 285  Q
    ||||    
T  8349739 taag 8349736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 2514610 - 2514714
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagtt 294  Q
    |||||||||||||  ||||| ||  ||||| |||||||||||||||||||||||| || ||||||||||| |  ||||  ||||| || |||||||||||    
T  2514610 cttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctataagtt 2514709  T
Q  295 gtttt 299  Q
     ||||    
T  2514710 atttt 2514714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 9027484 - 9027567
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    ||||||||||| ||||||||||||| ||||| |||| ||||||||||||||| |||  | ||||||||||| |  |||||||||    
T  9027484 gcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtcaaactgtttt 9027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 10452496 - 10452419
Alignment:
Q  221 agtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    |||| |||||||||||||||||||||||  ||  ||||||||||||  |||| |||| | ||||||||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgttt 10452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 28660248 - 28660137
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattc-aactgtttt--tacataagctataag 292  Q
    |||||| |||||||||||| ||| |||||||||| |||||  ||||| ||| || || |||||||||||| || || ||||||  || ||||||||||||    
T  28660248 ttatagtataaacacttatcatataagtgtttatatataaattatttttatgataaaagataaaataaaagtcaaattgttttgatatataagctataag 28660149  T
Q  293 ttgtttttgtaa 304  Q
     |||||||||||    
T  28660148 ctgtttttgtaa 28660137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 4006647 - 4006726
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||||| ||||| |||||||||||  || ||||||||||| |  || |||||||| |||||||||||||||||||    
T  4006647 aagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgtttt 4006726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 9732383 - 9732450
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaat 261  Q
    |||||||||||||||| |||  ||| ||||| ||||| |||||||||||||||| | |||||||||||    
T  9732383 gcttatagcataaacatttaccatataagtgcttatgcataagctatttctatattaaaggataaaat 9732450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 3737959 - 3738029
Alignment:
Q  177 aaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    |||| ||||||| ||| ||||||||| |||||||||||  ||  |||| ||||||||||||||||||||||    
T  3737959 aaaaaacttaattaagcgcttatagcgtaaacacttatcgtatgagtgcttatgtataagctatttctata 3738029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 7148590 - 7148671
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataag 292  Q
    ||||||||| ||||| |||||||||||||||||||| || ||| ||||||| ||||| ||||| |||  | ||||||||||||    
T  7148590 cttattatataagtgcttatgtataagctatttctacaactaaagataaaa-aaaatccaactctttacatataagctataag 7148671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 31461573 - 31461639
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||| ||| |||||||  |||| |||||||| || ||||| |||||||||||||||||||||||    
T  31461573 acttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataa 31461639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 281974 - 281850
Alignment:
Q  231 tataagctatttctataattaaggataaaataaaattcaact-gtttttacataagctataagttgtttttgtaa-ctatcatagagatttcatgggaat 328  Q
    ||||||||||| ||||||  || ||||||||||| | ||||| ||||| | |||||||||||| ||| ||  ||| ||||| ||||||  |||||| |||    
T  281974 tataagctattcctataacaaaagataaaataaagt-caacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaat 281876  T
Q  329 aagctgaaaacagcttacagacatgt 354  Q
    |||||||||||| |||| ||||||||    
T  281875 aagctgaaaacaacttatagacatgt 281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 3169397 - 3169312
Alignment:
Q  205 aaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctata 290  Q
    |||||||||| ||| ||||| |||||| ||| ||||||||||||  || ||| ||||||| |  ||||||||| ||||||||||||    
T  3169397 aaacacttatcatataagtgcttatgtgtaacctatttctataacaaaagatgaaataaattcgaactgttttcacataagctata 3169312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 7351769 - 7351676
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctat 289  Q
    ||||||||||| | ||||| ||| || || |||||||||| |||||| |||||| ||  |||||||||| || ||||||||| | |||||||||    
T  7351769 ttatagcataagctcttatcatataaatgcttatgtataaactatttatataataaactataaaataaagttaaactgttttcatataagctat 7351676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 7354111 - 7354216
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagt 293  Q
    ||||||||||||||  ||| | |||||||| || |||||||| ||||||||||||  || |||||||||||||  |||| |||| | ||||| || |||     
T  7354111 gcttatagcataaatgcttttcatacaagttttcatgtataaactatttctataacaaaagataaaataaaatcgaactattttcatataagatacaagc 7354210  T
Q  294 tgtttt 299  Q
    ||||||    
T  7354211 tgtttt 7354216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 31668847 - 31668794
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||| || |||| ||| ||||| |||||||||||||||||||||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgtataagctatttctataa 31668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 34429836 - 34429748
Alignment:
Q  211 ttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||| |||| ||||||||||| |||||||||||| |  ||||||||||| |  |||||||||   |||| ||||||||||||||    
T  34429836 ttattgtactagtgattatgtataagttatttctataataagagataaaataaagtctaactgttttcttataaactataagttgtttt 34429748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 27727237 - 27727166
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctattt-ctataattaaggataaaataaa 264  Q
    |||||||| |||||||||||| ||| ||||| |||| || ||| ||||| |||||||||| |||||||||||    
T  27727237 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaa 27727166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 33500615 - 33500540
Alignment:
Q  223 tgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    ||||||||||||||||||||||||||  || |||||| ||||||  ||||||||  | ||||| |||||| |||||    
T  33500615 tgtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgttt 33500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 33823433 - 33823386
Alignment:
Q  204 taaacacttattatacaagtgtttatgtataagctatttctataatta 251  Q
    ||||| ||||||||| || |||||||| ||||||||||||||||||||    
T  33823433 taaacgcttattatataaatgtttatgcataagctatttctataatta 33823386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 34405027 - 34405082
Alignment:
Q  209 acttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||| ||| |||||||||| ||||||||||||||||||| || | |||||||||    
T  34405027 acttatgatataagtgtttatctataagctatttctataataaaagttaaaataaa 34405082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 1402942 - 1403008
Alignment:
Q  233 taagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||||||  || ||||||||||| || |||| |||| | ||||||||||| |||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgtttt 1403008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 14340992 - 14340931
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttat 229  Q
    |||||| |||||  ||||||| ||| ||||||| ||||||||||||| ||| ||||||||||    
T  14340992 tgtttggataaacaacttaattaagtgcttataacataaacacttatcatataagtgtttat 14340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 32975873 - 32975990
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| ||| | ||||||||||| | ||| | ||| ||||||||||||||||| ||||||| |||  ||  |||||||||| |  ||||||||  | |    
T  32975873 acttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtcaaactgtttcaata 32975972  T
Q  282 taagctataagttgtttt 299  Q
     |||| ||||||||||||    
T  32975973 gaagcaataagttgtttt 32975990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 33068735 - 33068626
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacat 282  Q
    |||||| ||| | ||||||||||| | ||||| | | || || ||||||||||| |||||||||||  || |||||||||| ||  ||||||||| | ||    
T  33068735 cttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataatatcaaactgttttcaaat 33068636  T
Q  283 aagctataag 292  Q
    ||| ||||||    
T  33068635 aagatataag 33068626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 323744 - 323828
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa 304  Q
    ||||| || ||||||||||||||||||| | || ||||||||||| |  ||||||||| | ||||| ||| || | |||||||||    
T  323744 aagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataagttatgagctatttttgtaa 323828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 781326 - 781362
Alignment:
Q  228 atgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||||||||||||| || |||||||||||    
T  781326 atgtataagctatttctataataaaagataaaataaa 781362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 1497887 - 1497935
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctattt 242  Q
    ||||||||||||||||||||| ||  ||||| |||||| ||||||||||    
T  1497887 gcttatagcataaacacttatcatttaagtgcttatgtttaagctattt 1497935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 24836344 - 24836292
Alignment:
Q  212 tattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||| |||||||||||| |||||||||||  || |||||||||||    
T  24836344 tattatataagtatttatgtataagttatttctataacaaaagataaaataaa 24836292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 31828912 - 31828992
Alignment:
Q  167 ctgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    |||||| ||||||  ||||||| ||| ||||||||| ||||||||||| ||| || || ||| | ||||||| ||||||||    
T  31828912 ctgtttctataaacaacttaattaagcgcttatagcgtaaacacttatcatataattgcttacgcataagctgtttctata 31828992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 298
Target Start/End: Original strand, 4558679 - 4558809
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaatt 267  Q
    |||||| |||||  ||||||| | | |||||||||||||||  |||||||  |||||||||||||||||||||||||||||| || ||||||||||| ||    
T  4558679 tgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagtt 4558778  T
Q  268 caactgtttttacataagctataagttgttt 298  Q
     || | |||| | ||| |||||||| |||||    
T  4558779 aaattattttcatatatgctataagctgttt 4558809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 26716596 - 26716440
Alignment:
Q  197 tatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgt 296  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||||   | ||| ||||||| |  || | |||||||| |||||||||| | |    
T  26716596 tatagcataaacacttattatataagtgcttatgtataagctacttctataa--caagattaaataaagtcaaattatttttacaaaagctataagattt 26716499  T
Q  297 ttttgt-aactatcatagagatttcatgggaataagctgaaaacagcttacagacatgt 354  Q
    |||  | | ||||| ||||||  | | || |||||||||||||||||||||| ||||||    
T  26716498 tttaatgacctatcctagagaggttacggaaataagctgaaaacagcttacaaacatgt 26716440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 12972751 - 12972868
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| ||| ||||||||||||| || |||| ||| ||||| |||||||||||||||||| ||||   | ||| |||||||||| ||||| ||| |      
T  12972751 acttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataacagaagatgaaataaaattaaactggtttcatg 12972850  T
Q  282 taagctataagttgtttt 299  Q
    ||||||||||||| ||||    
T  12972851 taagctataagttatttt 12972868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 31884502 - 31884606
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagtt 294  Q
    |||||||||||| | ||||| |||||||||  |||||||||| |||||||||||  ||  ||||||| ||||| || |||||| | ||||||||||| ||    
T  31884502 cttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaaatcaaattgaattgttttcatataagctataaatt 31884601  T
Q  295 gtttt 299  Q
    |||||    
T  31884602 gtttt 31884606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 44617962 - 44617882
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaata 262  Q
    |||||||||||  |||||||| ||||||||| ||||| ||  ||||||||||||||||||||||||| |||  ||||||||    
T  44617962 acttaatcaagcacttatagcttaaacacttgttatataacagtttatgtataagctatttctataactaaaaataaaata 44617882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 33209378 - 33209285
Alignment:
Q  199 tagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataag 292  Q
    |||||||| || |||| |||||||||| |||  |||||||||||||||||| || ||||||||||| |  ||||||||| | |||| |||||||    
T  33209378 tagcataagcatttatcatacaagtgtctataaataagctatttctataatgaaagataaaataaagtcgaactgttttcatataaactataag 33209285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 43208322 - 43208242
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||||  ||||||| ||| |||||||| ||||||  | || ||| |||| ||||||||||||||||||||||||    
T  43208322 tgtttgtataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagctatttctataa 43208242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 16211015 - 16210944
Alignment:
Q  228 atgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||| | || ||||||||||| ||  | |||||| | |||||||||||||||||||    
T  16211015 atgtataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctataagttgtttt 16210944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 34563157 - 34563227
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||||||| |||| ||| ||||| |||| |||||| ||||||||| |  ||||||||||||||    
T  34563157 gcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaa 34563227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 1112785 - 1112858
Alignment:
Q  219 caagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataag 292  Q
    |||||| ||||||||| |||||||||||||  || ||||||||||  || || |||||| ||||||||||||||    
T  1112785 caagtgcttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttcacataagctataag 1112858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 4763830 - 4763931
Alignment:
Q  199 tagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    |||||||| || |||||| | ||||||||||| ||||| |||||| | ||  || ||||||||||| |  ||| ||||| |||||||||||||| |||||    
T  4763830 tagcataagcagttattacataagtgtttatgcataagttatttcgacaacaaaagataaaataaattcaaaccgttttcacataagctataagctgttt 4763929  T
Q  299 tt 300  Q
    ||    
T  4763930 tt 4763931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 35869744 - 35869849
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagt 293  Q
    ||||||||||||| ||||||| ||| ||||  |||||||||||| ||||||| ||  ||  |||||||||| |  |||  |||| | |||||||||||||    
T  35869744 gcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagctataagt 35869843  T
Q  294 tgtttt 299  Q
    ||||||    
T  35869844 tgtttt 35869849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 39551355 - 39551267
Alignment:
Q  211 ttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||| ||| |||||||||||||||| ||| ||| ||||| || |||||||||||  | |||||| || | | |||||||||||||||||    
T  39551355 ttatcatataagtgtttatgtataacctacttccataataaaagataaaataaagctaaactgtcttcatacaagctataagttgtttt 39551267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 5226497 - 5226576
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaat 261  Q
    ||||||||||  | |||||||||||||| |||| ||| |||||||||||||||| | ||||| ||||  || ||||||||    
T  5226497 acttaatcaactgtttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5226576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 11415049 - 11415104
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagc 237  Q
    ||||| ||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||    
T  11415049 acttattcaagcgcttatagcataatcacttatcatataagtgttcatgtataagc 11415104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 27320213 - 27320276
Alignment:
Q  184 ttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    ||||| ||| ||||||||||||||||||||| | | ||||| ||| |||||||||||| |||||    
T  27320213 ttaattaagcgcttatagcataaacacttatcacataagtgcttacgtataagctattcctata 27320276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 344
Target Start/End: Original strand, 38561649 - 38561784
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgt-aactat 308  Q
    ||||||||| |||||| ||| |||||| ||||| |||||  || ||||||||||| |  |||| ||||||  ||  ||||||||||||||  | ||||||    
T  38561649 cttattatataagtgtctatatataagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaactat 38561748  T
Q  309 catagagatttcatgggaataagctgaaaacagctt 344  Q
     ||||||| ||||||  ||||| | |||||||||||    
T  38561749 tatagagagttcatgaaaataaacggaaaacagctt 38561784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 3945207 - 3945281
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagtt 294  Q
    |||||||||| |||||| |||||| ||||  || |||||||||||||  | || |||||| ||||||||||||||    
T  3945207 aagtgtttatatataagttatttcaataacaaaagataaaataaaatgaagctatttttatataagctataagtt 3945281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 39561665 - 39561543
Alignment:
Q  233 taagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagagatttcatgggaataag 331  Q
    ||||||||||||||||  ||| |||||||||| |  |  |||||| |  ||| |||||||||||||| |||| |||||||  | |  | |||| ||||||    
T  39561665 taagctatttctataacaaagtataaaataaagtcgatttgttttcatctaaactataagttgttttcgtaagctatcatgaaaagcttatggaaataag 39561566  T
Q  332 ctgaaaacagcttacagacatgt 354  Q
    |||||||||||| ||||||||||    
T  39561565 ctgaaaacagctaacagacatgt 39561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 42508738 - 42508656
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| ||| |||| || |||||||| |||| ||| ||| ||||||||||  |||||||||||||| ||  ||||||||||    
T  42508738 acttaattaagtgcttctaacataaacatttatcatataagggtttatgtattggctatttctataataaaatataaaataaa 42508656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 6875670 - 6875605
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtat 233  Q
    |||||| |||||  ||||||| |||  |||||||| |||||||| |||||| ||||||||||||||    
T  6875670 tgtttggataaaccacttaattaagcacttatagcttaaacactcattatataagtgtttatgtat 6875605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 6918326 - 6918245
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataa 291  Q
    ||||| ||| |||||||| | |||||||||||| |||||| || ||||||||||| |  |||||||||   |||||||||||    
T  6918326 cttataatataagtgtttgtatataagctatttatataataaaagataaaataaagtcaaactgttttctaataagctataa 6918245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 11056814 - 11056725
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||| ||| ||||||| ||| || ||||||||||||||  || |  |||||||| || |||| |||| | |||||||||||||||||||    
T  11056814 cttatcatataagtgttcatgcatgagctatttctataacaaaaggaaaaataaagttgaactattttcatataagctataagttgtttt 11056725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 13459585 - 13459657
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||||||||||| || || ||||||||  || |||||| ||| |  |||||||||||||||||||    
T  13459585 ttatgtataagctatttctatgataaaagataaaat-gaagtcaactttttgtgtataagctataagttgtttt 13459657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 21270180 - 21270233
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||| ||||| ||| ||||| |||||| |||| |||||||||||    
T  21270180 cttatagcataaacgcttatgatataagtggttatgtctaagatatttctataa 21270233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 42597340 - 42597413
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||||||  || ||||||||||| |  || |||||| |   |||||||||||||||||    
T  42597340 ttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgtttt 42597413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 1470985 - 1470949
Alignment:
Q  228 atgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||||||||||||| || |||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaa 1470949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 5290570 - 5290602
Alignment:
Q  216 atacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||| |||||||||||||||||||||||    
T  5290570 atacaagtgcttatgtataagctatttctataa 5290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 345
Target Start/End: Original strand, 8062431 - 8062583
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattc-aactgtttttacataagctataagt 293  Q
    |||||||||||| || |||| ||| |||  ||||| ||||||||||||| ||||  || ||||||| |||| || || |||||| | ||||||||||||     
T  8062431 cttatagcataagcatttatcatataagcatttatctataagctatttcaataaccaatgataaaaaaaaagtcaaattgttttcatataagctataaga 8062530  T
Q  294 tgtttttgtaa-ctatcatagagatttcatgggaataagctgaaaacagctta 345  Q
    |||| |  ||| ||||| |||||| || |||  ||||||||| ||| ||||||    
T  8062531 tgttctcataagctatcttagagagtttatgaaaataagctggaaatagctta 8062583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 8187314 - 8187251
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttatt-atacaagtgtttatgtat-aagctatttct 244  Q
    ||||||| ||| |||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  8187314 acttaattaagcgcttatagcataaaca-ttattcatataagtgtttatgtataaagctatttct 8187251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 10939328 - 10939384
Alignment:
Q  208 cacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||| | |||||||||||||| ||||||||| |  || |||||||||||    
T  10939328 cacttattatactactgtttatgtataagttatttctattacaaaagataaaataaa 10939384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 11494211 - 11494271
Alignment:
Q  181 tacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatt 241  Q
    |||||||| |||  |||||||||||| | ||||||||| ||||| | ||||||||||||||    
T  11494211 tacttaattaagtacttatagcataagctcttattatataagtgctcatgtataagctatt 11494271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 14949799 - 14949863
Alignment:
Q  198 atagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaata 262  Q
    ||||||| |||| |||| ||||||||  |||||||||||||| ||||||||  || |||||||||    
T  14949799 atagcatcaacatttatcatacaagttcttatgtataagctacttctataacaaaagataaaata 14949863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 29973014 - 29973134
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagagatt 318  Q
    ||||| |||| |||||||||||||| |||   | | ||||||||| |  |||| |||| |||||||||||||||||||||  ||| ||||| | |||| |    
T  29973014 aagtgcttatatataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagt 29973113  T
Q  319 tcatgggaataagctgaaaac 339  Q
    | |||| ||||| ||||||||    
T  29973114 ttatggaaataaactgaaaac 29973134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 40356788 - 40356848
Alignment:
Q  204 taaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||| | ||| ||||| |||| |||||||||||| |||||| || |||||||||||    
T  40356788 taaacacttgtcatataagtgcttatctataagctatttatataataaaagataaaataaa 40356848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 36007584 - 36007667
Alignment:
Q  59 acctgtgtttcaagctcagttaaatgagcttgctttcttcgtcttgagcgtctagctgattccctattagagagcatcctgaaa 142  Q
    ||||||||||| | ||||||||||||||| |||||||||| |||||||||||| ||||| || ||||| || ||||||||||||    
T  36007584 acctgtgtttccaactcagttaaatgagcctgctttcttcttcttgagcgtctggctgactctctattggaaagcatcctgaaa 36007667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 27140391 - 27140485
Alignment:
Q  196 ttatagcataaacacttat--tatac-aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagct 287  Q
    |||||||||||||||||||  ||||| |||||||||||| |||| |||||||||||  || |||||||||| ||| || |||||||| |||||||    
T  27140391 ttatagcataaacacttatcatatactaagtgtttatgtgtaagttatttctataacaaaagataaaataatattaaattgtttttatataagct 27140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 15360826 - 15360903
Alignment:
Q  219 caagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgt 296  Q
    ||||||||||||||| || |||||||||||  || ||||||||||| |  ||||||||| | ||||||||||||||||    
T  15360826 caagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 1432455 - 1432527
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||||||||||| | || ||||||||| | ||||| |||||||  ||||||||||| |||||||    
T  1432455 tatgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctataaattgtttt 1432527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 6074389 - 6074486
Alignment:
Q  201 gcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||||||| | || ||||||| | |||||||||||||||||||  || ||| | ||||| || ||||||||| | ||||||||| |||||||||    
T  6074389 gcataaacacttact-tataagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataagctatgagttgtttt 6074486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 172280 - 172320
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaat 266  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  172280 ttatgtataagctatttctataactaaagataaaataaaat 172320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 30259662 - 30259546
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| |||  |||||| |||| |||||||| ||| ||||| ||||| | |||||||||||||||  ||  |||||||||| |  ||||| ||| | |    
T  30259662 acttaataaagcacttataacatacacacttatcatagaagtgcttatgcacaagctatttctataacaaaatataaaataaagtcaaactgctttgata 30259563  T
Q  282 taagctataagttgttt 298  Q
    ||||||||||| |||||    
T  30259562 taagctataagctgttt 30259546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 836470 - 836396
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    |||||| |||||||||| |||| | || |||||||||||| | || |||||||  |||||||||||||| |||||    
T  836470 ttatgtgtaagctatttttatagtgaaagataaaataaaactaaattgtttttgtataagctataagttattttt 836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 23895231 - 23895313
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||  |||| ||||||| | ||||| ||| ||||  |||||||||||||||||||||||  || |||||||||||    
T  23895231 acttaattaagcacttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaataaa 23895313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 26679185 - 26679235
Alignment:
Q  198 atagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||| ||||| ||| |||||||||||| |||| |||||||||||    
T  26679185 atagcataaacgcttatgatataagtgtttatgtgtaagttatttctataa 26679235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 30237935 - 30237857
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtg-tttatgtataagctatttcta 245  Q
    |||||| |||||  ||||||| ||| |  |||||||||| ||||||||||| ||||| |||||||||||| ||||||||    
T  30237935 tgtttggataaacaacttaattaagtgtctatagcataagcacttattatataagtgttttatgtataagttatttcta 30237857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 40358033 - 40357979
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||| |||||  ||||||||||||||||||||||  | ||||||||||||    
T  40358033 cttattatataagtgactatgtataagctatttctataacaatggataaaataaa 40357979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 49692181 - 49692143
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  49692181 ttatgtataagttatttctataataaaggataaaataaa 49692143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 4256604 - 4256645
Alignment:
Q  211 ttattatacaagtgtttatgtataagctatttctataattaa 252  Q
    ||||||||||||||||||||||||| ||| || |||||||||    
T  4256604 ttattatacaagtgtttatgtataacctacttttataattaa 4256645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 291
Target Start/End: Complemental strand, 4276799 - 4276702
Alignment:
Q  195 cttatagcataaacacttattatacaagtgttt-atgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataa 291  Q
    |||||||||||| ||||||| ||| || ||||| | |||||| ||||||||||||  || ||||| ||||| |   |||||||| |||||||||||||    
T  4276799 cttatagcataatcacttatcatataaatgttttaagtataaactatttctataacaaaagataatataaagtcatactgttttcacataagctataa 4276702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 24857688 - 24857623
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| ||| |||| || ||||| |||| || ||| |||||||||||||||| ||||||||||||    
T  24857688 cttaattaagtgcttgtatcataagcactaatcatataagtgtttatgtataaactatttctataa 24857623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 38578469 - 38578538
Alignment:
Q  229 tgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    ||||||||||||||||||||  || ||||| ||||| || || | |||||  ||||||||||||||||||    
T  38578469 tgtataagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgttt 38578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 3052814 - 3052774
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaat 266  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  3052814 ttatgtgtaagctatttctataactaaagataaaataaaat 3052774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 5160342 - 5160370
Alignment:
Q  220 aagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||||||||||||||||||    
T  5160342 aagtgtttatgtataagctatttctataa 5160370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 5756823 - 5756739
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa 304  Q
    ||||||| | |||||||||||||||||||  || ||| | ||||| || ||||||||| | ||||  ||||||||||||| ||||    
T  5756823 aagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataaattataagttgttttcgtaa 5756739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 33759503 - 33759547
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||| |||| |||||||||||||||||||||| |||| ||||||    
T  33759503 aagtgcttatatataagctatttctataattaaagatataataaa 33759547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 37842485 - 37842413
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||||   || ||| ||||||| || |||||| ||   |||||||||||||||||||    
T  37842485 tatgtataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataagttgtttt 37842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 40833938 - 40833898
Alignment:
Q  254 gataaaataaaattcaactgtttttacataagctataagtt 294  Q
    |||||||||||||  ||||||||||| ||||||||||||||    
T  40833938 gataaaataaaatcaaactgtttttatataagctataagtt 40833898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 46712290 - 46712334
Alignment:
Q  204 taaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||| | ||||||| ||| |||||||||||||||||||    
T  46712290 taaacacttatcacacaagtgcttaggtataagctatttctataa 46712334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 49557037 - 49557153
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacat 282  Q
    |||||| ||| ||||||| | ||| ||||||| ||| ||||| |  |||||||| |||||||||||  || ||||||||||| || ||  || || |  |    
T  49557037 cttaattaagtgcttataacgtaatcacttatcatataagtgctgctgtataagttatttctataacaaaagataaaataaagttaaatagtattcattt 49557136  T
Q  283 aagctataagttgtttt 299  Q
    |||||||||||||||||    
T  49557137 aagctataagttgtttt 49557153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 52013806 - 52013858
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||| |||||| ||  || || |||||||||||||||||||||||    
T  52013806 ttatagcataaatacttatcatgtaaatgcttatgtataagctatttctataa 52013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 29588778 - 29588841
Alignment:
Q  185 taatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||| ||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataa 29588841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 8472016 - 8472121
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagt 293  Q
    |||| |||||||| ||||||| ||| || ||||||||||| || ||||||||| ||  |  |||||||||||| |||   ||||||||||||||||||||    
T  8472016 gcttttagcataagcacttatcatataaatgtttatgtatgagttatttctattatggaaaataaaataaaatacaatcatttttacataagctataagt 8472115  T
Q  294 tgtttt 299  Q
    ||||||    
T  8472116 tgtttt 8472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 20982325 - 20982228
Alignment:
Q  167 ctgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||||  |||| || ||| |||||||||||||   ||||| ||| ||||| |||||||||||||||||||||||  ||||||||||||||    
T  20982325 ctgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaa 20982228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 26516180 - 26516276
Alignment:
Q  169 gtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaa 265  Q
    ||||| |||||  ||||||| ||| ||||||||||||| | ||||| ||| ||||| |||||||||||||||||||| ||  || ||||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaaa 26516276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 34245664 - 34245754
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagaga 316  Q
    ||||||||| || ||||||||| ||| ||||||| ||| | |||||||||| | |||||||||||||||||||| ||| ||||||| ||||    
T  34245664 tatgtataatctttttctataactaaagataaaacaaattccaactgttttaatataagctataagttgtttttataagctatcatggaga 34245754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 6738568 - 6738500
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||||| ||||| || || ||||||||    
T  6738568 ttatagcataaacacttatcatataagtacttatgtataagctatttcaataataaaagacaaaataaa 6738500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 13224348 - 13224420
Alignment:
Q  206 aacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgttttt 278  Q
    |||| |||| ||| ||||| |||||||||||||||||||||||  || ||||||||||||| ||||| |||||    
T  13224348 aacagttatcatagaagtgcttatgtataagctatttctataacaaaagataaaataaaatccaactcttttt 13224420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 29115376 - 29115325
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttcta 245  Q
    |||||||||||||||| |||| ||| ||||| ||||||||||||||||||||    
T  29115376 gcttatagcataaacatttatcataaaagtgcttatgtataagctatttcta 29115325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 35135799 - 35135725
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagtt 294  Q
    ||||||||||||||||| |||||||||||  || ||||||||||| |  |||| |||| | ||||||||||||||    
T  35135799 aagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 18704166 - 18704038
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagagatttcatgg 324  Q
    ||||||||||| |||||||||||  || |||||| |||| |  | || |||||| |||||||||||||||||||  ||| |||| | | |||| | ||||    
T  18704166 ttatgtataagttatttctataacaaaagataaa-taaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatgg 18704068  T
Q  325 gaataagctgaaaacagcttacagacatgt 354  Q
     ||||||||||||||| |||| ||||||||    
T  18704067 aaataagctgaaaacaacttatagacatgt 18704038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 32059743 - 32059647
Alignment:
Q  202 cataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||| |||||| ||| ||||| ||||||||||||| ||| | ||| |||| |||||||||| |  ||||||||| | |||||||||||| ||||||    
T  32059743 cataaatacttatcatataagtgcttatgtataagctgtttttgtaactaag-ataaaataaagtcaaactgttttcatataagctataagctgtttt 32059647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 41052787 - 41052880
Alignment:
Q  184 ttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    ||||| ||| |||| |||||||||| ||||| | ||| ||| ||||||||||||| |||| ||||| || ||| ||||||| || |||||||||    
T  41052787 ttaattaagtgcttgtagcataaacgcttatcagacaggtgcttatgtataagctttttcaataataaaagatcaaataaacttaaactgtttt 41052880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 7096268 - 7096220
Alignment:
Q  216 atacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||| |||||||||||||||||||||||  || |||||||||||    
T  7096268 atacaagtgcttatgtataagctatttctataacaaaagataaaataaa 7096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 10391265 - 10391329
Alignment:
Q  199 tagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataa 263  Q
    |||||||||||||||| ||| ||||| ||| ||||||||||||| |||||  || ||||||||||    
T  10391265 tagcataaacacttatcatataagtgcttacgtataagctatttttataacaaaagataaaataa 10391329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 14961852 - 14961904
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    ||||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  14961852 cttatagcataaacacttattttataagcgcttatgtatgagctatttctata 14961904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 34198525 - 34198565
Alignment:
Q  385 cacaagtgtttttgttagtacataaactcaaataagtcaat 425  Q
    ||||||||||| |||||||| ||||||||||||||||||||    
T  34198525 cacaagtgtttatgttagtaaataaactcaaataagtcaat 34198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 41819518 - 41819614
Alignment:
Q  194 gcttatagcataaacacttattat-acaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctat 289  Q
    ||||||||||||||||||||| || |  || | || |||||||||||||||||||||  | ||||||||||| || || |||||||  |||||||||    
T  41819518 gcttatagcataaacacttatcatgatgagcggttttgtataagctatttctataatggaagataaaataaatttaaattgtttttgtataagctat 41819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 11457019 - 11457074
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagct 238  Q
    |||||||||| |||||||||||||   ||||| |||||| ||||||||||||||||    
T  11457019 cttaatcaagcgcttatagcataagtgcttatcatacaaatgtttatgtataagct 11457074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 16889674 - 16889801
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagagatttcatgg 324  Q
    |||||||||||||||||| ||||  || |||||| | || |  ||||||||||| | |||||||||| ||||||  ||| ||||  |||||| || ||||    
T  16889674 ttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatgg 16889773  T
Q  325 gaataagctgaaaacagcttacagacat 352  Q
     ||||| ||||||||| |||| ||||||    
T  16889774 aaataatctgaaaacaacttatagacat 16889801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 11054125 - 11054163
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||||||||||||||| || |||||||||||    
T  11054125 ttatgtataagctatttctataataaaagataaaataaa 11054163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 12407807 - 12407754
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||| ||||||||||| |||||||||||||||||||||  || |||||||||||    
T  12407807 cttatcatacaagtgtt-atgtataagctatttctataacaaaagataaaataaa 12407754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 27104577 - 27104527
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttct 244  Q
    ||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||    
T  27104577 gcttatagcataaacacttatcatataagtgcttacgtataagttatttct 27104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 27106086 - 27106016
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||| |||||||||||||||| || ||||| ||| |||||||  ||||||||||  || |||||||||||    
T  27106086 gcttacagcataaacacttattgtataagtgcttacgtataagtcatttctataacaaaagataaaataaa 27106016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 2933765 - 2933704
Alignment:
Q  243 ctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa 304  Q
    ||||||| || |||||||| || || ||||||||| | ||||| ||||||||||||||||||    
T  2933765 ctataataaaagataaaatgaagttaaactgttttcatataagttataagttgtttttgtaa 2933704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 14295454 - 14295523
Alignment:
Q  235 agctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa 304  Q
    ||||||||||||||  || ||||||||||| |  ||||||||| | |||||||||||| |||||| ||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaa 14295523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 19177403 - 19177496
Alignment:
Q  211 ttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa 304  Q
    |||| ||| ||||| |||||||||| ||||||||| ||   | |||||||| || |  ||||||||| | ||||||||||||||||||| ||||    
T  19177403 ttatcatataagtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctataagttgttttcgtaa 19177496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 345
Target Start/End: Complemental strand, 37690767 - 37690647
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa--ctatcatagagatttcatgg 324  Q
    |||||| ||| |||||||||||| || |||||||| ||||  ||  ||||| | |||||||||||||||||||  |||   ||| || ||||  | ||||    
T  37690767 tatgtaaaagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaagttattatggagagcttatgg 37690668  T
Q  325 gaataagctgaaaacagctta 345  Q
     ||||||||||||||||||||    
T  37690667 aaataagctgaaaacagctta 37690647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 2569875 - 2569815
Alignment:
Q  184 ttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttct 244  Q
    ||||| ||| ||||||| | |||||| |||| ||| ||||| |||||||||||||||||||    
T  2569875 ttaattaagcgcttataccgtaaacatttatcatataagtgcttatgtataagctatttct 2569815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 10907312 - 10907392
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    ||||||||||||||||| ||||||||||  ||| | |||||||||||  ||||  ||| | |||| ||||||| |||||||    
T  10907312 aagtgtttatgtataagttatttctatagctaatggtaaaataaaatcaaactactttcatataatctataagctgttttt 10907392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 33961598 - 33961678
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaata 262  Q
    ||||||| ||| | |||||| |||| ||||||| ||| |||||||| |||||||| || || |||||  ||||||||||||    
T  33961598 acttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggtacttttataacaaaggataaaata 33961678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 39257575 - 39257495
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| |||||  ||||||| ||| |||||||||||||||  |||| ||  ||||| ||||||||| ||||| |||||||    
T  39257575 tgtttggataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatatgctatctctataa 39257495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 30207719 - 30207573
Alignment:
Q  208 cacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ct 306  Q
    ||||||| ||| ||||| ||||||||| | || ||||||||  ||  |||||||||| |  ||||||||| | |||||||||||||||||||  ||| ||    
T  30207719 cacttatcatataagtgcttatgtatatgttagttctataacaaaaaataaaataaa-tcaaactgttttcatataagctataagttgttttcataagct 30207621  T
Q  307 atcatagagatttcatgggaataagctgaaaacagcttacagacatgt 354  Q
    | | ||||||  | |||| |||||||||||||||||||||||||||||    
T  30207620 accttagagagattatggaaataagctgaaaacagcttacagacatgt 30207573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 485961 - 486064
Alignment:
Q  167 ctgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaat 266  Q
    ||||||| || || |||||||| ||| ||||||||||||| | ||||| ||| ||||| ||||||||| |||||||||| ||  || ||||||||||||     
T  485961 ctgtttggatgaactacttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaataaaag 486060  T
Q  267 tcaa 270  Q
    ||||    
T  486061 tcaa 486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 50745939 - 50746013
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    |||||| |||||||||| |||||  || |||||||||||||  ||||||||||| |||| ||| |||||||||||    
T  50745939 ttatgtctaagctatttttataacaaaagataaaataaaatcaaactgtttttatataaactacaagttgttttt 50746013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 24443945 - 24444050
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagt 293  Q
    ||||||||||||| ||||||| ||| ||||  |||||||||||| ||||||| ||  ||  |||||||||| |  |||  |||| | |||||||||||||    
T  24443945 gcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagctataagt 24444044  T
Q  294 tgtttt 299  Q
    ||||||    
T  24444045 tgtttt 24444050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 24929368 - 24929505
Alignment:
Q  162 aggtactgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaat 261  Q
    |||| ||||||| |||||  |||||||  || | ||||| ||||| | ||||| ||| || ||||| ||||| | ||||||||||||  || ||||||||    
T  24929368 aggttctgtttggataaacaacttaattgagtgtttataacataatctcttatcatataattgtttttgtatgaactatttctataacaaaagataaaat 24929467  T
Q  262 aaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||| |  ||||||||| | | |||||||||||||||||    
T  24929468 aaagtctaactgttttcataaaagctataagttgtttt 24929505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 53943525 - 53943617
Alignment:
Q  205 aaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    |||| |||||| || ||||| |||| ||||||| |||| |||||  |||||| ||||||||| |||||||||| | |||| |||||||||||||    
T  53943525 aaacgcttattgtataagtgcttatttataagccatttttataacaaaggatgaaataaaat-caactgttttcatataaactataagttgttt 53943617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 7749219 - 7749155
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataa 284  Q
    ||||||||||||||| |||||||||||||| || || ||||||||||  |||| |||||| ||||    
T  7749219 aagtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaactatttttatataa 7749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 21043389 - 21043325
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctat 246  Q
    ||||||| ||| |||||||||||| || ||||| || ||||||||| |||||||| |||||||||    
T  21043389 acttaatgaagtgcttatagcatagacgcttatcattcaagtgtttgtgtataagttatttctat 21043325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 46860276 - 46860328
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctat 246  Q
    ||||||||||||||||||||| ||| ||||| ||||| ||||| |||||||||    
T  46860276 gcttatagcataaacacttatgatataagtgcttatgaataagatatttctat 46860328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 51044596 - 51044552
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||||||||||||||||||||||||||  || |||||||||||    
T  51044596 aagtgtttatgtataagctatttctataacaaaagataaaataaa 51044552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 8423025 - 8422897
Alignment:
Q  169 gtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattc 268  Q
    ||||| |||||  ||||||| ||| | ||||||||||| ||  ||| ||| | ||| ||||||||||||||||| |||||  || ||||||||||| |      
T  8423025 gtttggataaacaacttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtc- 8422927  T
Q  269 aactgtttttacataagctataagttgtttt 299  Q
     | |||||| | |||||||||||||||||||    
T  8422926 -attgttttcatataagctataagttgtttt 8422897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 21593148 - 21593078
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataa 291  Q
    ||||| |||||||||| |||||||||||| ||| |||||||| ||| |||||| |||| | |||||||||||    
T  21593148 aagtgcttatgtataaactatttctataactaaagataaaat-aaagtcaactattttcatataagctataa 21593078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 4471078 - 4471148
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||||| || |||||||| ||||| ||||| |||| |||||| |||||  || |||||||||||    
T  4471078 gcttatagcataagcaattattatataagtgcttatgcataaactatttttataacaaaagataaaataaa 4471148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 24936206 - 24936271
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||| ||| ||||||||||||||  ||||| ||| ||||| ||||||||||| |||||||||||    
T  24936206 acttaatgaagtgcttatagcataaaggcttat-atataagtggttatgtataagttatttctataa 24936271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 30338723 - 30338649
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    |||||||||| ||||||||||||  || |||| |||||| || ||||||||| | |||||||||||  |||||||    
T  30338723 ttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctataaactgttttt 30338649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 41050603 - 41050657
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||| | ||||||| ||| ||||||| |||||||| ||||||||||||    
T  41050603 gcttatagcatgaccacttatcatataagtgttaatgtataaactatttctataa 41050657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 44319861 - 44319950
Alignment:
Q  198 atagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagcta 288  Q
    ||||||||| ||||||| ||| ||||| | |||||||| ||||||||||||  || ||||||||||| |  ||||||||| | ||||||||    
T  44319861 atagcataagcacttatcatataagtgctcatgtataaactatttctataa-aaaagataaaataaagtcgaactgttttcatataagcta 44319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 345
Target Start/End: Complemental strand, 54325190 - 54325048
Alignment:
Q  204 taaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgta 303  Q
    |||| |||||| ||| ||||| || ||||||| |||||||||| |  || ||||||||||| |  ||||||||| | |||||||||||| | ||||   |    
T  54325190 taaatacttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaa 54325091  T
Q  304 a-ctatcatagagatttcatgggaataagctgaaaacagctta 345  Q
    | ||||||| |||| || ||||  |||| ||||||||||||||    
T  54325090 agctatcatggagagtttatggagataaactgaaaacagctta 54325048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 7731703 - 7731760
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    |||||||| ||||||||||||||||||||| || ||  ||||||| || |||||||||    
T  7731703 aagtgtttgtgtataagctatttctataataaaagactaaataaagttaaactgtttt 7731760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 8703796 - 8703719
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaa 260  Q
    |||||| ||| ||||||| |||||| |||||| | |  |||| ||||||||||||||||||| |||  ||||||||||    
T  8703796 cttaattaagtgcttataacataaatacttatcagatgagtgcttatgtataagctatttctctaacaaaggataaaa 8703719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 20907106 - 20907163
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    ||||||||||||||||||||||| |||||  || ||||||||||| |  |||||||||    
T  20907106 aagtgtttatgtataagctatttgtataagaaaagataaaataaagtgaaactgtttt 20907163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 22471270 - 22471343
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||| |||||| ||||||| |||||| ||||    ||||||||| | ||||| |||||||||||||    
T  22471270 ttatgtataagccatttctttaattaaagataaattaaaggcaaactgttttcatataagttataagttgtttt 22471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 23525739 - 23525674
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| ||| |||||||||||| ||||||| ||||  |||  |||||||| ||||||||||||||    
T  23525739 cttaattaagtgcttatagcatagacacttaatatattagtccttatgtatgagctatttctataa 23525674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 54986331 - 54986383
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||||| |  || ||| |||| ||||||||||||||||||||||||    
T  54986331 ttatagcataaacgccaatcatataagtttttatgtataagctatttctataa 54986383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 55870471 - 55870399
Alignment:
Q  227 tatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||| | |||| |||||  || ||| ||||||| |  ||||||||| |||||||||||||||||||||    
T  55870471 tatgtataatccatttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgtttt 55870399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 38462194 - 38462285
Alignment:
Q  200 agcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataa 291  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||   || ||||||||||| |  ||||||||| | ||| |||||||    
T  38462194 agcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataa 38462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 43116589 - 43116486
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttg 295  Q
    ||||||||||||   |||| |||||||||||||||| ||||||||||||||||  || |||||||| ||||  |||  |||| | ||||||||||||| |    
T  43116589 ttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaatcaaatcaaacaattttcatataagctataagtcg 43116490  T
Q  296 tttt 299  Q
    ||||    
T  43116489 tttt 43116486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 29094288 - 29094333
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagcta 239  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  29094288 gcttatagcataaacacttatcatataagtgtttatgtataagcta 29094333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 32703048 - 32703148
Alignment:
Q  197 tatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgt 296  Q
    |||||||||  || |||| ||| || |||||||||||||||||||||||| || || ||||||||||| |  || |||||| | ||||||||||| ||||    
T  32703048 tatagcatatccatttatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagctataaattgt 32703147  T
Q  297 t 297  Q
    |    
T  32703148 t 32703148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 49772860 - 49772761
Alignment:
Q  167 ctgtttgtataaaatacttaatcaagggcttata--gcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||||  ||||||| ||| |||||||  ||||| |||||||| ||| ||||||||||||||||||||||| | |||| ||  ||||||||||    
T  49772860 ctgtttgaataaacaacttaattaagcgcttatatagcatagacacttatcatataagtgtttatgtataagctatttttgtaataaaaaataaaataaa 49772761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 20192743 - 20192657
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaact 306  Q
    ||||| ||||||||||||||||| |||||  || ||||||||||| |  ||| ||||| | |||| ||||||| |||||||||||||    
T  20192743 aagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttttgtaact 20192657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 345
Target Start/End: Complemental strand, 36646523 - 36646393
Alignment:
Q  216 atacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcataga 314  Q
    ||||||||||| || |||||||||||||||| |  || ||||||||||| |  || |||||| | ||||| ||||| |||||||  ||| ||||| ||||    
T  36646523 atacaagtgttgatatataagctatttctatgacaaaagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctaga 36646424  T
Q  315 gatttcatgggaataagctgaaaacagctta 345  Q
    || || || | |||||| |||||||||||||    
T  36646423 gagtttatagaaataagatgaaaacagctta 36646393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 40122883 - 40122755
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgtaa-ctatcatagagatttcatgg 324  Q
    |||||||||||||||||| ||||  || ||||||||||| |  ||||||||| | | |||||||||||||||||| ||| ||||| || | | || ||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctataagttgtttttataagctatcctaaaaagttaatgg 40122785  T
Q  325 gaataagctgaaaacagcttacagacatgt 354  Q
     |||||||| |||||| |||| ||| ||||    
T  40122784 aaataagctaaaaacaacttatagagatgt 40122755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 42084388 - 42084309
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaac-tgtttttacataagctataagttgtttt 299  Q
    |||||| ||||||||||||||||||||||  ||||||||||| ||  ||||| |||||| | ||||||||| |||||||||    
T  42084388 aagtgtctatgtataagctatttctataacaaaggataaaat-aatgtcaacttgttttgatataagctattagttgtttt 42084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 298
Target Start/End: Original strand, 36139786 - 36139889
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagtt 294  Q
    ||||||||||| |  ||||||| | ||||| ||||| ||||||||||||| ||||  | ||||||||||| |  ||||| |||   ||||||||||||||    
T  36139786 cttatagcatacatgcttattaaataagtggttatgaataagctatttctgtaatataagataaaataaagtcaaactgatttcgtataagctataagtt 36139885  T
Q  295 gttt 298  Q
    ||||    
T  36139886 gttt 36139889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 41848681 - 41848642
Alignment:
Q  386 acaagtgtttttgttagtacataaactcaaataagtcaat 425  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  41848681 acaagtgtttatgttagtagataaactcaaataagtcaat 41848642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 48397587 - 48397658
Alignment:
Q  228 atgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    ||||||||| ||||| |||||| || ||||||||||| |  || ||||||||  ||||||||||||||||||    
T  48397587 atgtataagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgtttt 48397658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 2304378 - 2304336
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaata 262  Q
    ||||| |||||||||||||||||||||||| || |||||||||    
T  2304378 aagtgattatgtataagctatttctataataaaagataaaata 2304336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 3016011 - 3015957
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||| ||||||||||||||||| ||||| |||||||| |  |||||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataa 3015957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 20174048 - 20173982
Alignment:
Q  197 tatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataa 263  Q
    |||||||||||||||  ||||| ||||| |||||||| || |||||||||||  || ||||||||||    
T  20174048 tatagcataaacactagttatataagtgcttatgtattagttatttctataacaaaagataaaataa 20173982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 41029013 - 41028919
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctat 289  Q
    |||||||| ||||  ||||| ||| ||||| |||||||||||||||||||||||  || || |||||||| |  | ||||||| | |||||||||    
T  41029013 cttatagcttaaatgcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 44061151 - 44061081
Alignment:
Q  229 tgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||   || ||||||||||  || || |||||||  |||||||||||||||||||    
T  44061151 tgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgtttt 44061081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 2128384 - 2128331
Alignment:
Q  224 gtttatgtataagctatttctataattaaggataaaataaaattcaactgtttt 277  Q
    |||||||||||||||||||||||||  || ||||||||||| || || ||||||    
T  2128384 gtttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 13804696 - 13804749
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||| || || ||  |||||||||||||||| ||||||||||||    
T  13804696 cttatagcataaacgctgatcatttaagtgtttatgtataaactatttctataa 13804749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 20211083 - 20211030
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||||||  | ||||| || ||||||||||||||||||| ||||||||||    
T  20211083 cttatagcatagcctcttatcatgcaagtgtttatgtataagccatttctataa 20211030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 21574365 - 21574438
Alignment:
Q  160 ttaggtactgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtat 233  Q
    |||||| ||||||| ||||| |||||||| ||| |||||||| |||||| ||| | ||  ||||||||||||||    
T  21574365 ttaggtcctgtttggataaactacttaattaagtgcttatagtataaacgcttctcatgtaagtgtttatgtat 21574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 43115010 - 43115110
Alignment:
Q  240 tttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttttgt-aactatcatagagatttcatgggaataagctgaaaa 338  Q
    |||||||||  || ||||||||||| ||  |||||||| | |||||||||||||||||||  | ||||||||| ||||  | |||| |||||||||||||    
T  43115010 tttctataacaaaagataaaataaattttgactgtttt-atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaa 43115108  T
Q  339 ca 340  Q
    ||    
T  43115109 ca 43115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 48597763 - 48597698
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| ||| |||||||||| || ||||||||||  ||||| |||||| ||| ||||||||||||    
T  48597763 cttaattaagcgcttatagcacaatcacttattatgtaagtgcttatgtttaaactatttctataa 48597698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 21500873 - 21500917
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||||| |||||||||| |||||||||||||||  ||||||||||    
T  21500873 aagtgtctatgtataagatatttctataattaaatataaaataaa 21500917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 31403166 - 31403206
Alignment:
Q  305 ctatcatagagatttcatgggaataagctgaaaacagctta 345  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  31403166 ctatcctagagagttcatggtaataagctgaaaacagctta 31403206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 10150676 - 10150731
Alignment:
Q  208 cacttattatacaagtgtttatgtataagctatttctataattaaggataaaataa 263  Q
    ||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||    
T  10150676 cacttattatataagtgtttatgtataagttatttctataataaaagataaaataa 10150731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 35755658 - 35755560
Alignment:
Q  201 gcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||| |  || |||||||||||||||||||||||||||||| ||  | |||||||| |  || |||||| |  ||||||||||||||||||    
T  35755658 gcataaacacttgtcgtataagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctataagttgtttt 35755560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 5133711 - 5133784
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||||||||||  || |||||||||||  | ||||||||||| ||||| |||||| ||||||    
T  5133711 ttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgtttt 5133784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 10143068 - 10143184
Alignment:
Q  183 cttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacat 282  Q
    |||||| ||| ||||| |||| ||| ||||||   | ||||| ||||||||||| |||||||||||  || |||||||| || |  ||||||||||| ||    
T  10143068 cttaattaagtgcttacagcacaaaaacttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatat 10143167  T
Q  283 aagctataagttgtttt 299  Q
    |||||||||||| ||||    
T  10143168 aagctataagttttttt 10143184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 13869258 - 13869206
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctat 246  Q
    ||||||||||||||||||||| ||| |||| |||||| |||||||||||||||    
T  13869258 gcttatagcataaacacttatcatagaagtatttatgcataagctatttctat 13869206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 34339032 - 34339100
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||||||||||| ||| ||||| |||||||||| || ||||||||  ||| |||||||||||    
T  34339032 ttatagcataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaa 34339100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 33232117 - 33232037
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| ||| |||||||||||| |||||||| |||  |||||| ||||||| |||| ||||||||| || |||||||||||    
T  33232117 acttaattaagtgcttatagcatacacacttatcata--agtgttcatgtataggctagttctataataaaagataaaataaa 33232037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 41033087 - 41032958
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggat-aaaataaaattcaactgtttttacataagctataagttgtttttgtaactatcatagagatt 318  Q
    ||||| |||||||||||||||||||||||  || ||| ||||||||||     ||||||||||||||||| |||   ||||  ||| |||| || ||| |    
T  41033087 aagtgcttatgtataagctatttctataacaaaagataaaaataaaat-----tgtttttacataagctacaagcgattttcataattatcttatagagt 41032993  T
Q  319 tcatgggaataagctgaaaacagcttacagacatg 353  Q
    | |||| ||||||||||||||| |||| |||||||    
T  41032992 ttatggaaataagctgaaaacaacttatagacatg 41032958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 42974247 - 42974313
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||| ||| ||||||||||||||||||||| |||  |||| || ||||||| ||||||||||||    
T  42974247 acttaattaagagcttatagcataaacacttatcatattagtgcttgtgtataaactatttctataa 42974313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 43965292 - 43965242
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttcta 245  Q
    |||||||||||| ||||||| ||| ||||||||||| ||||||||||||||    
T  43965292 cttatagcataagcacttatcatataagtgtttatgaataagctatttcta 43965242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 9878805 - 9878740
Alignment:
Q  234 aagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtttt 299  Q
    |||||||||||||||  || ||||||||||| |  |||| |||||||||| |||||||||||||||    
T  9878805 aagctatttctataacaaaagataaaataaactcaaactatttttacatatgctataagttgtttt 9878740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 29503239 - 29503190
Alignment:
Q  199 tagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||||| ||||||||||| ||||||||||||||| | |||||||||||    
T  29503239 tagcataagcacttattatagaagtgtttatgtatatgatatttctataa 29503190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 11393817 - 11393765
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    ||||||||||||||| |||| ||  ||||| ||||||||||||||||||||||    
T  11393817 cttatagcataaacatttatcatttaagtgcttatgtataagctatttctata 11393765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 11410478 - 11410426
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctata 247  Q
    ||||||||||||||| |||| ||  ||||| ||||||||||||||||||||||    
T  11410478 cttatagcataaacatttatcatttaagtgcttatgtataagctatttctata 11410426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 31740091 - 31740019
Alignment:
Q  226 ttatgtataa-gctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgtt 297  Q
    |||||||||| ||||||||||||| ||| ||||||||||| |  |||| |||| | |||||||||||||||||    
T  31740091 ttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgtt 31740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 1899810 - 1899877
Alignment:
Q  197 tatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    |||| ||||||||||||| | | || || |||||||||||| ||||||||||| ||| ||||||||||    
T  1899810 tataccataaacacttatcacagaaatgcttatgtataagcgatttctataataaagtataaaataaa 1899877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 18962175 - 18962104
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataa 291  Q
    ||||| |||||||| |||||||| |||||  || ||||||||||| || ||||||||| | |||||||||||    
T  18962175 aagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataa 18962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 4550655 - 4550789
Alignment:
Q  165 tactgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||| |||||  ||||||| ||   |||||||||||| | ||||| | | ||||| ||||||||||| | |||| ||||| || ||||||||||     
T  4550655 tactgtttggataaacaacttaattaacaacttatagcataatctcttatcacataagtgcttatgtataagttgtttccataataaaagataaaataac 4550754  T
Q  265 attcaactgtttttacataagctataagttgtttt 299  Q
     |  | ||||||| | |||| ||||||||||||||    
T  4550755 gtcaagctgttttcatataaactataagttgtttt 4550789  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 9478222 - 9478260
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  9478222 cttatcatataagtgtttatgtataagctatttctataa 9478260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 15173437 - 15173487
Alignment:
Q  198 atagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||| |||||  ||||||||| |||||||||| |||||||||||    
T  15173437 atagcataaacgcttatcgtacaagtgtctatgtataagttatttctataa 15173487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 28902010 - 28902080
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctata 290  Q
    ||||| ||||||||||||||||| |||||   | | |||||||||||| ||||||||| | ||||||||||    
T  28902010 aagtgcttatgtataagctatttttataacataagttaaaataaaattaaactgttttcatataagctata 28902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 38239709 - 38239647
Alignment:
Q  199 tagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaat 261  Q
    |||||||| |||| || ||  |||||||||||||||||||||||||||||  || ||||||||    
T  38239709 tagcataagcactcatcatgtaagtgtttatgtataagctatttctataacaaaagataaaat 38239647  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 44606235 - 44606181
Alignment:
Q  210 cttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||| |||||||||||||||||||||||  ||||  || |||||||||||    
T  44606235 cttattatataagtgtttatgtataagctattttcataacaaaagataaaataaa 44606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 5867352 - 5867303
Alignment:
Q  196 ttatagcataaacacttattatacaagtgtttatgtataagctatttcta 245  Q
    ||||||||| ||||||||| ||| |||| ||||||| |||||||||||||    
T  5867352 ttatagcatcaacacttatcatataagtatttatgtctaagctatttcta 5867303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 29430680 - 29430717
Alignment:
Q  211 ttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  29430680 ttatcatacaagggtttatgtataagctatttctataa 29430717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 33192088 - 33192197
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttaca 281  Q
    ||||||| ||| ||||| ||||||||| ||||| | ||||||| |||| || || ||||||||||||   | ||||||||||| |  ||||||||| | |    
T  33192088 acttaattaagcgcttaaagcataaactcttatcacacaagtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcata 33192187  T
Q  282 taagctataa 291  Q
    |||| |||||    
T  33192188 taagttataa 33192197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 33197401 - 33197348
Alignment:
Q  195 cttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| ||||||| ||||| ||| ||||| |||| ||||||||||||||||||    
T  33197401 cttataacataaacgcttatcatataagtgcttatctataagctatttctataa 33197348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 3235546 - 3235491
Alignment:
Q  195 cttatagcataaacacttat--tatacaagtgtttatgtataagctatttctataa 248  Q
    ||||||||||||||||||||  |||| ||||| |||||||| |||||||| |||||    
T  3235546 cttatagcataaacacttatcatatataagtgcttatgtattagctatttttataa 3235491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 3673913 - 3673953
Alignment:
Q  385 cacaagtgtttttgttagtacataaactcaaataagtcaat 425  Q
    ||||||||||| |||||||  ||||||||||||||||||||    
T  3673913 cacaagtgtttatgttagttgataaactcaaataagtcaat 3673953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 5045294 - 5045250
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||||||||||||||||||| |||||  || |||||||||||    
T  5045294 aagtgtttatgtataagctatttttataacaaaagataaaataaa 5045250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 13864583 - 13864611
Alignment:
Q  220 aagtgtttatgtataagctatttctataa 248  Q
    |||||||||||||||||||||||||||||    
T  13864583 aagtgtttatgtataagctatttctataa 13864611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 15171131 - 15171211
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataa 248  Q
    |||||| |||||  ||||||| ||| | ||||||||||| | | |||| || ||||||||||||||||| | |||||||||    
T  15171131 tgtttggataaataacttaattaagtgtttatagcataagctcgtattttataagtgtttatgtataagttttttctataa 15171211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 21363914 - 21363981
Alignment:
Q  168 tgtttgtataaaatacttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataag 236  Q
    |||||| ||||||  |||||| ||||||||||||||| ||||| ||| ||| ||||||||||| |||||    
T  21363914 tgtttggataaaaggcttaattaagggcttatagcat-aacacatatcatataagtgtttatggataag 21363981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 25609729 - 25609773
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||| |||||||||||||||||||||||  || |||||||||||    
T  25609729 aagtgcttatgtataagctatttctataagaaaagataaaataaa 25609773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 32694151 - 32694223
Alignment:
Q  226 ttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttt 298  Q
    ||||||||||||||||||||||   || |||||||||||||   ||| |||||| ||||  ||||||||||||    
T  32694151 ttatgtataagctatttctatatcaaaagataaaataaaatcagactatttttatataatttataagttgttt 32694223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 36114660 - 36114580
Alignment:
Q  220 aagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagttgttttt 300  Q
    ||||| ||||| |||| ||| ||||||||  || ||||||||||| || || |||||||  |||||| |||||||||||||    
T  36114660 aagtgcttatgcataacctagttctataacaaaagataaaataaagttaaattgtttttgtataagcaataagttgttttt 36114580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 41170714 - 41170754
Alignment:
Q  385 cacaagtgtttttgttagtacataaactcaaataagtcaat 425  Q
    ||||||||||| |||||||| ||||||||||||||| ||||    
T  41170714 cacaagtgtttatgttagtagataaactcaaataagccaat 41170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 101550 - 101476
Alignment:
Q  84 gagcttgctttcttcgtcttgagcgtctagctgattccctattagagagcatcctgaaaggcaatgtcattaggc 158  Q
    |||||||||||||   || |||| || |||| |||||||||||||| |||||||||| |||||||||||||||||    
T  101550 gagcttgctttctatttcctgagagtttagccgattccctattagaaagcatcctgagaggcaatgtcattaggc 101476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 1249 - 1167
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||  ||||||||||||||   ||| ||| ||||| |||||||||||||||||||||||  || |||||||||||    
T  1249 acttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaa 1167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 2726 - 2808
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaa 264  Q
    ||||||| |||  ||||||||||||||   ||| ||| ||||| |||||||||||||||||||||||  || |||||||||||    
T  2726 acttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaa 2808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 27483 - 27588
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaataaaattcaactgtttttacataagctataagt 293  Q
    ||||||||||||| | ||||| ||  ||||| ||||||||||| |||||||||||   | ||||||||||| |  || |||||| | |||| ||||||||    
T  27483 gcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagt 27582  T
Q  294 tgtttt 299  Q
    ||||||    
T  27583 tgtttt 27588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 5816 - 5745
Alignment:
Q  194 gcttatagcataaacacttattatacaagtgtttatgtataagctattt-ctataattaaggataaaataaa 264  Q
    |||||||| |||||||||||| ||| ||||| |||| || ||| ||||| |||||||||| |||||||||||    
T  5816 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaa 5745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 5914 - 5993
Alignment:
Q  182 acttaatcaagggcttatagcataaacacttattatacaagtgtttatgtataagctatttctataattaaggataaaat 261  Q
    ||||||||||  | |||||||||||||| |||| ||| |||||||||||||||| | ||||| ||||  || ||||||||    
T  5914 acttaatcaactgtttatagcataaacatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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