View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11748_high_8 (Length: 241)
Name: NF11748_high_8
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11748_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 8390800 - 8391023
Alignment:
| Q |
19 |
taccccgctgatcttactttattt-cagtatgtttttgtgaaagttcagtagacaatttgagttattacagaagctgcgtaggagagctttgattacctc |
117 |
Q |
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| T |
8390800 |
taccccgctgatcttactttattttcagtatgtttttgtgaaagtttagtagacaatttgagttattacagaagctgcgtaggagagttttgattacctc |
8390899 |
T |
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| Q |
118 |
gaaatattttagcattcatttccttttagattatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagagga |
217 |
Q |
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| T |
8390900 |
gaaatattctagcatttatttcctttcagattacccaaatcgtggcaaaccaaatcaaatgcatgaaagagcgtctagactgaccaaaacatgtagagga |
8390999 |
T |
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| Q |
218 |
accaaactgaataaagtgatccat |
241 |
Q |
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| T |
8391000 |
accaaactaaataaagtgatccat |
8391023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 31126803 - 31126674
Alignment:
| Q |
105 |
ctttgattacctcgaaatattttagcattcatttccttttagattatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaa |
204 |
Q |
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| T |
31126803 |
ctttgattgcctaaaaatattctagcattcatttccttccaaattacccaagttgtgacaaaccaaatcaaatgcatgaaagagcgtctagatttaccat |
31126704 |
T |
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| Q |
205 |
aacatgtagaggaaccaaactgaataaagt |
234 |
Q |
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| T |
31126703 |
aacctgttgagaaaccaaactgaacaaagt |
31126674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 8949401 - 8949308
Alignment:
| Q |
147 |
attatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagaggaaccaaactgaataaagtgatcca |
240 |
Q |
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| T |
8949401 |
attatccaaattgtagcaaacctaatcaagtgcatgaaagagcgtctagatttatcgtaacctgtagagaaactaaactgaatgaagtgatcca |
8949308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 35528061 - 35528112
Alignment:
| Q |
147 |
attatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagatt |
198 |
Q |
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| T |
35528061 |
attacccaagttgtagcaaaccaaatcaaatgcatgaaagagcgtctagatt |
35528112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 30221275 - 30221212
Alignment:
| Q |
86 |
cagaagctgcgtaggagagctttgattacctcgaaatattttagcattcatttccttttagatt |
149 |
Q |
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| T |
30221275 |
cagaagctgcgtaggagagctttgcttacctcaaaatattccagcattcctttccttctagatt |
30221212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 33261097 - 33260985
Alignment:
| Q |
127 |
tagcattcatttccttttagattatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagaggaaccaaactg |
226 |
Q |
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| T |
33261097 |
tagcattcatttccttccaaattaccca-gttgtagcaaaccaaatcaaatgcataaaagagcatttagatttaccgtaacctgtagaagaaccgaactg |
33260999 |
T |
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| Q |
227 |
aataaagtgatcca |
240 |
Q |
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| T |
33260998 |
aatgaaatgatcca |
33260985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 33281256 - 33281144
Alignment:
| Q |
127 |
tagcattcatttccttttagattatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagaggaaccaaactg |
226 |
Q |
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|||||||||||||||| | |||| ||| || || |||||||||||||||||||| ||||||| | |||||| ||| ||| |||||| ||||| ||||| |
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| T |
33281256 |
tagcattcatttccttccaaattaccca-gttgtagcaaaccaaatcaaatgcataaaagagcatttagatttaccgtaacctgtagaagaaccgaactg |
33281158 |
T |
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| Q |
227 |
aataaagtgatcca |
240 |
Q |
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| T |
33281157 |
aatgaaatgatcca |
33281144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 29132513 - 29132591
Alignment:
| Q |
162 |
gcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagaggaaccaaactgaataaagtgatcca |
240 |
Q |
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| T |
29132513 |
gcaaaccaaatcaaatgcataaaagagcatctagatttaccgtaacctatagaagaaccgaactgaatgaagtgatcca |
29132591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 24572871 - 24572964
Alignment:
| Q |
147 |
attatccaagtcgtggcaaaccaaatcaaatgcatgaaagagcgtctagattgaccaaaacatgtagaggaaccaaactgaataaagtgatcca |
240 |
Q |
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| T |
24572871 |
attacccaagttgtagcaaactaaatcaaatgcataaaagagcatctagatttaccgtaacctataaaagaaccgaactgaatgaagtgatcca |
24572964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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