View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11748_low_1 (Length: 481)
Name: NF11748_low_1
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11748_low_1 |
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| [»] scaffold0693 (2 HSPs) |
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Alignment Details
Target: scaffold0693 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3620 - 3829
Alignment:
| Q |
1 |
cagcatttgaagcctatctatttgcactaactggaacagaagcattccagtggatgaaagtatgcaacaaattcaccagattctgctaccaaattggagg |
100 |
Q |
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| T |
3620 |
cagcatttgaagcctgtctttttgcactaactggatcagaagcattccagtggatgaaagtatgcaacaaattcaccagattctgctaccaaattggagg |
3719 |
T |
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| Q |
101 |
ggcaatattatgctgctatatagcatccattttaatggctatgatatcaactatctcagcttacaaagtattaagaatgtactctccaaagaggttcctg |
200 |
Q |
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| T |
3720 |
ggcaatattatgctgctatatagcatccattttaatggctatgatatcaactatctcagcttacaaagtattaagaatgtactctccaaagaggttcctg |
3819 |
T |
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| Q |
201 |
cgtttgaagg |
210 |
Q |
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| T |
3820 |
cgtttgaagg |
3829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0693; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 249 - 479
Target Start/End: Original strand, 3931 - 4170
Alignment:
| Q |
249 |
cgtgtgcaagcaagagggataggtacacatagctggttgcatttattgtcggttcctaatattgtttgaatttgtctcttctcctccnnnnnnnnnnnnn |
348 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3931 |
cgtgtgcaagcaagagggataggtacacatagctagttgcatttattgtcggttcctaatattgtttgaatttgtctcttctcctccttttttatttttt |
4030 |
T |
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| Q |
349 |
naatttgtacaaaagtattatttgaacattcaat---------gcaagttttgtttcctctgttgaataaaaacaagagaactgctcctctccttagaat |
439 |
Q |
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| T |
4031 |
taatttgtacaaaagtattatttgaatattcaatttaattaatgcaagttttgtttcctctgttgaataaaaacaagagaactgctcctctccttagagt |
4130 |
T |
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| Q |
440 |
ttacatctgtgcgacatttttcagttagagttgattctcg |
479 |
Q |
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| T |
4131 |
taacatctgtgcgacatttttaagttagagttgattctcg |
4170 |
T |
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