View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11748_low_3 (Length: 369)
Name: NF11748_low_3
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11748_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 38 - 369
Target Start/End: Complemental strand, 55202834 - 55202501
Alignment:
| Q |
38 |
ttagttctacacctaatgcaattaaagatgctgctactacttattgtcagttattactttcttccaagagtgataacaatgtgaaa--ctcattgtgctt |
135 |
Q |
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| T |
55202834 |
ttagttctacacctaatgcaattaaagttactgccactacttattgtcagttattactttcttccaagagtgataacaatgtgaaaaactcattgtgctt |
55202735 |
T |
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| Q |
136 |
gatcgtttgaatgagcttaatagggaaaatatggttgatatggttatggatgtgcttagggcgctttcaaaggctcgtaactatgttgttagaaggcaga |
235 |
Q |
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| T |
55202734 |
gatcgtttgaatgagcttaatagggaaattatggttgatatggttatggatgtgcttagggcgttttcgaaggctcgtaactatgttgttggaaggaaga |
55202635 |
T |
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| Q |
236 |
ttattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttattgtgatgcttgagaaggaggttgttaaaactaagagtggggagcatca |
335 |
Q |
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| T |
55202634 |
ttattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttgttgtgatgcttgagaaggaggttgttaaaactaagactggggagcatct |
55202535 |
T |
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| Q |
336 |
aaagaagaagtataggaagatgctggtggaggct |
369 |
Q |
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| T |
55202534 |
gaagaagaagtataggaagatgctggtggaggct |
55202501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 1471868 - 1472202
Alignment:
| Q |
2 |
ctgttgtttatgaatgtgctggtacacttgttttggttagttctacacctaatgcaattaaagatgctgctactacttattgtcagttattactttcttc |
101 |
Q |
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| T |
1471868 |
ctgttgtttatgaatgtgctggtacgcttgtttcgcttagttctgcaccaaccgcgattaaagcggctgcgaatacttattgtcagttattgctttct-- |
1471965 |
T |
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| Q |
102 |
caagagtgataacaatgtgaaactcattgtgcttgatcgtttgaatgagct---------taatagggaaaatatggttgatatggttatggatgtgctt |
192 |
Q |
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| T |
1471966 |
-cagagtgataacaatgtgaagcttattgtgcttgatcggcttaacgagcttaagagggataatagggagattatggttgatatggttatggatgtgctt |
1472064 |
T |
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| Q |
193 |
agggcgctttcaaaggctcgtaactatgttgttagaaggcagattattgatgttgctcttgaacttgtaactcctgagaatattcatgaggttattgtga |
292 |
Q |
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| T |
1472065 |
agggcgttatc---gactcctaatcatgatattaggagaaagactattgatattgctcttgagcttattacgccgaagaatattgatcaggttgttatga |
1472161 |
T |
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| Q |
293 |
tgcttgagaaggaggttgttaaaactaagagtggggagcat |
333 |
Q |
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| T |
1472162 |
tgcttaagaaggaggttgttaagacgcagagcggggagcat |
1472202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 46466957 - 46467160
Alignment:
| Q |
2 |
ctgttgtttatgaatgtgctggtacacttgttttggttagttctacacctaatgcaattaaagatgctgctactacttattgtcagttattactttcttc |
101 |
Q |
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||||||||||||||||||||||| ||||||||| ||| || |||||| ||||||| ||| |||||||| | |||||||| |||| || ||||| |
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| T |
46466957 |
ctgttgtttatgaatgtgctggtgcacttgtttcactta---ctgcacctactgcaattgaagctgctgctagtgcttattgtaagttgttgatttctc- |
46467052 |
T |
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| Q |
102 |
caagagtgataacaatgtgaaactcattgtgcttgatcgtttgaatgagcttaa---------tagggaaaatatggttgatatggttatggatgtgctt |
192 |
Q |
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| T |
46467053 |
--atagtgataacaatgtgaaacttattgtgcttgatcgtcttaacgagcttaagaggtataatagggagattatggttgatatggttatggatgtgctt |
46467150 |
T |
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| Q |
193 |
agggcgcttt |
202 |
Q |
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| T |
46467151 |
agggcacttt |
46467160 |
T |
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