View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11748_low_4 (Length: 367)
Name: NF11748_low_4
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11748_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 11419143 - 11418782
Alignment:
| Q |
1 |
ctaatgtctcacacattttcctagtggacgtgaaaagattttatcaaatggggtttaagattttagagttggtaagtgtgtaagcagtgccacgtatgag |
100 |
Q |
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| T |
11419143 |
ctaatgtctcacacattttcctagtggacgtgaaaagattttatcaaatggggtttaagattttagagttggtaagtgtgtaagcagtgccacgtatgag |
11419044 |
T |
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| Q |
101 |
tgtaggacccacactgtctctttgactaggttttattggtttcatcaataaagacacaatcacaattagaggtgaagttgttgaaagaataattgagatg |
200 |
Q |
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| T |
11419043 |
tgtaggacccacactgtctctttgactaggttttattggtttcatcaataaagacacaatcacaattagaggtgaagttgttgaaagaataattgagatg |
11418944 |
T |
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| Q |
201 |
ggttaggggatggggccaatggaccaaggtcctttcctataaacatggcctattagctaaccgcaaaatacacaaattgattgatatatgac-------- |
292 |
Q |
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| T |
11418943 |
ggttaggggatggggccaatggaccaaggtcctttcctataaacatggcctattagctaaccgcaaaatagacaaattgattgatatatgacaaagaaag |
11418844 |
T |
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| Q |
293 |
-tgctccccatacgcttcaacttcactttcgatcggattgtaattttcaattaactattttt |
353 |
Q |
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| T |
11418843 |
ttgctccccagacgcttcaacttcgctttcgatcggattgtaactttcaattaactattttt |
11418782 |
T |
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