View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11748_low_5 (Length: 364)
Name: NF11748_low_5
Description: NF11748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11748_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 129 - 350
Target Start/End: Original strand, 39608938 - 39609159
Alignment:
| Q |
129 |
gaatcatgaggagtttgacaccgtgggtttgttgaaacttcaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
228 |
Q |
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| T |
39608938 |
gaatcatgaggagtttgacaccgtgggtttgttgaaactttaaactgaaactttaaagtgtaactttagccaaaatcatggtggctcaccatcattccat |
39609037 |
T |
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| Q |
229 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttattcaaacatagatcactt |
328 |
Q |
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| T |
39609038 |
caaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaattcaaacatgatttatagtctcgattttattcaaacatagatcactt |
39609137 |
T |
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| Q |
329 |
tatagtcaatttaactgttcat |
350 |
Q |
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| T |
39609138 |
tatagtcaatttaactgttcat |
39609159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 39609469 - 39609553
Alignment:
| Q |
228 |
tcaaaccaaacatgcactaactttaacttgaaattgtgatttggaatttttaaatccaaacatgatttatagtctcgattttatt |
312 |
Q |
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| T |
39609469 |
tcaatccaaacatgtactaactctaacttgaaattttgatttggaatttttaaatccaaacatgatttatagtctcaattttatt |
39609553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 39608827 - 39608872
Alignment:
| Q |
18 |
acttttatttacgagaaactaaagtgattctaggaacataaaattg |
63 |
Q |
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| T |
39608827 |
acttttatttacgagaaactaaagtgattctaggaacataaaattg |
39608872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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