View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_high_12 (Length: 223)
Name: NF11749_high_12
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46053771 - 46053549
Alignment:
| Q |
1 |
atgagctcaaactgaaacagggtaccccacaagcgaatgaataaactggaaagtatgtacttctttcacaagaagtcaacaacgatgatgttaggattga |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46053771 |
atgagctcaaactgaaacagggcaccccacaagcgaatgaataaactggaaagtatgtacttctttcacaagaagtcaacaaagatgatgttaggattga |
46053672 |
T |
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| Q |
101 |
actccactaaagtacacaattaattctattaggtaaaataaacaatttcaactgctgatttcaacgatctatgatgtgtttgaacattaaagcttgagaa |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46053671 |
actccactaaagtacacaattaattcaattaggtaaaataaacaatttgaactgttaatttcaacgatctatgatgtgtttgaacatcaaagcttgagaa |
46053572 |
T |
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| Q |
201 |
tatttaaccgaaaattaaatagc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
46053571 |
tatttaaccgaaaattaaatagc |
46053549 |
T |
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