View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_high_6 (Length: 269)
Name: NF11749_high_6
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_high_6 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0238 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0071 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 12604560 - 12604292
Alignment:
| Q |
1 |
ctaaagcataattgtacatcttacttaattaaagaaaatccgagccgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12604560 |
ctaaatcataattgtacatcttacttaattaaagaaaatccgagctgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
12604461 |
T |
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| Q |
101 |
cctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtttcattcacccaagtttctaaattctcatattctccacttttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12604460 |
cctgcatatctcttccctaagtctccttagtctcttttacacttgaacacaaaagtttcattcacccaagtttctaaattctcatattctccacttttgg |
12604361 |
T |
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| Q |
201 |
ccaccatcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaat |
269 |
Q |
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| T |
12604360 |
ccaccatcatctgaagagtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaat |
12604292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 23261250 - 23261366
Alignment:
| Q |
58 |
ctcattggaacacatgttttactccacacaggtgaagaagcgccctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtt |
157 |
Q |
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|||||||||| ||||||| |||||||||| |||||||||| | || ||||||||||| ||||||| |||| ||| |||| | |||||||||||||| |
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| T |
23261250 |
ctcattggaa-acatgttcaactccacacatgtgaagaagcacgctacatatctcttctctaagtcaccttgctct---ttacccttgaacacaacagtt |
23261345 |
T |
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| Q |
158 |
tcattcacccaagtttctaaa |
178 |
Q |
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|||||||||||||||||||| |
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| T |
23261346 |
ccattcacccaagtttctaaa |
23261366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 12372 - 12640
Alignment:
| Q |
1 |
ctaaagcataattgtacatcttacttaattaaagaaaatccgagccgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12372 |
ctaaatcataattgtacatcttacttaattaaagaaaatccgagctgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
12471 |
T |
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| Q |
101 |
cctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtttcattcacccaagtttctaaattctcatattctccacttttgg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12472 |
cctgcatatctcttccctaagtcaccttagtctcttttacacttgaacacaaaagtttcattcacccaagtttctaaattctcatattctccacttttgg |
12571 |
T |
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| Q |
201 |
ccaccatcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaat |
269 |
Q |
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| T |
12572 |
ccaccatcatctgaagagtgaccacataggtatgtaatatgtttgttctttctcaatttcttattcaat |
12640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 10452530 - 10452798
Alignment:
| Q |
1 |
ctaaagcataattgtacatcttacttaattaaagaaaatccgagccgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10452530 |
ctaaatcataattgtacatcttacttaattaaagaaaatccgagctgcatatcatacctcattggaacacatgttttactccacacaggtgaagaagcgc |
10452629 |
T |
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| Q |
101 |
cctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtttcattcacccaagtttctaaattctcatattctccacttttgg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10452630 |
cctgcatatctcttccctaagtcaccttagtctcttttacacttgaacacaacagtttcattcacccaagtttctaaatcctcatattctccacttttgg |
10452729 |
T |
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| Q |
201 |
ccaccatcatctgaagagtgaccacatgggtatgtaatatgtttgttctttctcaatttcttattcaat |
269 |
Q |
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||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10452730 |
ccaccgtcatctgaagagtgatgacataggtatgtaatatgtttgttctttctcaatttcttattcaat |
10452798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 56478697 - 56478581
Alignment:
| Q |
58 |
ctcattggaacacatgttttactccacacaggtgaagaagcgccctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtt |
157 |
Q |
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|||||||||| ||||||| |||||||||| |||||||||| | |||||||||||||| ||||||| |||| |||| ||||| | |||||||||||||| |
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| T |
56478697 |
ctcattggaa-acatgttcaactccacacatgtgaagaagcacgctgcatatctcttctctaagtcacctt--tctc-tttacccttgaacacaacagtt |
56478602 |
T |
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| Q |
158 |
tcattcacccaagtttctaaa |
178 |
Q |
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|||||||||||||||||||| |
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| T |
56478601 |
ccattcacccaagtttctaaa |
56478581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 445398 - 445284
Alignment:
| Q |
58 |
ctcattggaacacatgttttactccacacaggtgaagaagcgccctgcatatctcttccctaagtctccttagtctcttttacacatgaacacaacagtt |
157 |
Q |
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|||||||||| ||||||| |||||||||| |||||||| | | |||||||||||||| ||||||| |||| |||| ||||| | |||||||||||||| |
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| T |
445398 |
ctcattggaa-acatgttcaactccacacatgtgaagaaccacgctgcatatctcttctctaagtcacctttgtct--tttacccttgaacacaacagtt |
445302 |
T |
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| Q |
158 |
tcattcacccaagtttct |
175 |
Q |
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||||||||||||||||| |
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| T |
445301 |
ccattcacccaagtttct |
445284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 10201 - 10084
Alignment:
| Q |
148 |
cacaacagtttcattcacccaagtttctaaattctcatattctccacttttggccaccatcatctgaagagtgaccacatgggtatgtaatatgtttgtt |
247 |
Q |
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|||||||||| |||||||| | || ||||||| ||||| | |||||| ||||||||||||||| |||||| || | ||| | |||| || |||||| |
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| T |
10201 |
cacaacagttccattcacctaggtatctaaatcctcatctcctccacctttggccaccatcatttgaagactgtcgacagagctatgcaa----tttgtt |
10106 |
T |
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| Q |
248 |
ctttctcaatttcttattcaat |
269 |
Q |
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|||||||||||||| ||||||| |
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| T |
10105 |
ctttctcaatttctgattcaat |
10084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 15451990 - 15452107
Alignment:
| Q |
148 |
cacaacagtttcattcacccaagtttctaaattctcatattctccacttttggccaccatcatctgaagagtgaccacatgggtatgtaatatgtttgtt |
247 |
Q |
| |
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|||||||||| |||||||| | || ||||||| ||||| | |||||| ||||||||||||||| |||||| || | ||| | |||| || |||||| |
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| T |
15451990 |
cacaacagttccattcacctaggtatctaaatcctcatctcctccacctttggccaccatcatttgaagactgtcgacagagctatgcaa----tttgtt |
15452085 |
T |
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| Q |
248 |
ctttctcaatttcttattcaat |
269 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
15452086 |
ctttctcaatttctgattcaat |
15452107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 6824033 - 6824001
Alignment:
| Q |
146 |
aacacaacagtttcattcacccaagtttctaaa |
178 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
6824033 |
aacacaacaatttcattcacccaagtttctaaa |
6824001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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