View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_high_8 (Length: 256)
Name: NF11749_high_8
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 28707875 - 28708011
Alignment:
| Q |
118 |
aaaatagaaaggagtacaaatagtactaaacccaagtttagttggtaataaatccacccaa---------agaacactagtacatgttctttacttaaag |
208 |
Q |
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| T |
28707875 |
aaaatagaaaggagtacaaatagtactatacccaagtttagttggtaatagatccacccaaagacaccaaagaacactagtacatgttcattacttaaag |
28707974 |
T |
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| Q |
209 |
aactccataacccagaaattacacacacgacattcat |
245 |
Q |
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| T |
28707975 |
aactccataacccagaaattacagacacgacattcat |
28708011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 28723124 - 28723190
Alignment:
| Q |
21 |
ttgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcactagtttttt |
87 |
Q |
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| T |
28723124 |
ttgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacactagtttttt |
28723190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 28730766 - 28730832
Alignment:
| Q |
21 |
ttgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcactagtttttt |
87 |
Q |
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| T |
28730766 |
ttgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatcccatacagcaacactagtttttt |
28730832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 28723315 - 28723370
Alignment:
| Q |
190 |
acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat |
245 |
Q |
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| T |
28723315 |
acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcat |
28723370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 28730957 - 28731012
Alignment:
| Q |
190 |
acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat |
245 |
Q |
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| T |
28730957 |
acatgctctttacttaaagaactccataacccaaaaattacagacacaacattcat |
28731012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 28707773 - 28707830
Alignment:
| Q |
22 |
tgtaataagcaaacaattaaccctgttcgaaagaacttcgatcccatacagcagcact |
79 |
Q |
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| T |
28707773 |
tgtaataagcaaacaagtaacccaatttgaaagaacttcgatcccatatagcagcact |
28707830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 28623715 - 28623770
Alignment:
| Q |
190 |
acatgttctttacttaaagaactccataacccagaaattacacacacgacattcat |
245 |
Q |
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||||| ||||||||||||||||||||||||||| || |||| |||| |||||||| |
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| T |
28623715 |
acatgctctttacttaaagaactccataacccataagttacgaacacaacattcat |
28623770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 28736575 - 28736621
Alignment:
| Q |
190 |
acatgttctttacttaaagaactccataacccagaaattacacacac |
236 |
Q |
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| T |
28736575 |
acatgttctttacttaaagaactccataacgtagaagttacagacac |
28736621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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