View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_1 (Length: 886)
Name: NF11749_low_1
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 482 - 777
Target Start/End: Original strand, 14144600 - 14144891
Alignment:
| Q |
482 |
cagaagttgcaaccgtcttccatttattgtcttaattctactaagcaattaaccaagtgaatctgaattttccaacttgaatattttcaacggctgctcc |
581 |
Q |
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| T |
14144600 |
cagaagttgcaaccgtcttccatttattgtcttaattctgctaagcaattcacgaagtgaatctgaattttccaacctgaatattttcaacggctgctcc |
14144699 |
T |
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| Q |
582 |
atatatgttaatgcccaaacttgtaaatttgtgtcgaagagcctcaatgaagttggttatattatcatgctcatcgtctgtaaaatctaaaatggcccaa |
681 |
Q |
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| T |
14144700 |
at----gtttatgcccaaacttgtaaatttgtgtcgaagagcctcaatgaagttggttagattatcatgctcatcgccagtaaaatctaaaatggcccaa |
14144795 |
T |
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| Q |
682 |
tgttcaaccggcttaccttcgacactcaaatttccatctaatttcagtgatggaggaataatcacacgtcctgtcacaactgtcatagaattgttg |
777 |
Q |
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| T |
14144796 |
tgttcaaccgaatttccttccacactcaaatttccatctaacttcaacgatggaggaagaatcacaagttcagtcacaactgtcatagaattgttg |
14144891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 367 - 483
Target Start/End: Original strand, 14144021 - 14144137
Alignment:
| Q |
367 |
acataggaaagaaatgggttctatgccccttcacagctaccacaacagtaatggtcggatggtaattaaagccaccaaaaactctcttcaagtcctccaa |
466 |
Q |
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| T |
14144021 |
acataggaaagaaatgggttctatgccccttcacagctaccacaacagtaatggttggatggtatttaaagccaccaaaatctctcttcaggtcctccaa |
14144120 |
T |
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| Q |
467 |
ctccacattcaggacca |
483 |
Q |
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| T |
14144121 |
ctcatcattcaggacca |
14144137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 14145881 - 14145941
Alignment:
| Q |
792 |
acataacttgtatgattggccatcttttccacccgtatcaggtctagttatcggacatcta |
852 |
Q |
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| T |
14145881 |
acataacttgtatgattggctatcttttccacccgggtcaggtctagttatctgacatcta |
14145941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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