View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_14 (Length: 242)
Name: NF11749_low_14
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_14 |
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| [»] scaffold1444 (2 HSPs) |
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Alignment Details
Target: scaffold1444 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 583 - 411
Alignment:
| Q |
52 |
acctcaaattattggaacatatgatggatccgtacctcaaactattgtaaacattttttcaatagaaaattgtgtcaataaatattgttaacagatatga |
151 |
Q |
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| T |
583 |
acctcaaattattggaaca---gatggatccgtacctcaaactattgtaaacattttttcaatagaaaattgtgtcaataaatattgttaacagatatga |
487 |
T |
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| Q |
152 |
tatattgaagtgatatgtattttagaggagttttaaattttaatgacttttaagacaagtcattaagcacacaact |
227 |
Q |
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| T |
486 |
tatattgaagtgatatgtattttagaggagttttaaattttaatgacttttaagacaagtcattaagcacacaact |
411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 1157 - 1110
Alignment:
| Q |
3 |
tatctttgttgttttaattgcgcttgtgattttgctaagcttagatat |
50 |
Q |
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| T |
1157 |
tatctttgttgctttaattgcgcttgtgattttgctaagcttaaatat |
1110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 17080787 - 17080740
Alignment:
| Q |
3 |
tatctttgttgttttaattgcgcttgtgattttgctaagcttagatat |
50 |
Q |
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| T |
17080787 |
tatctttgttgttttaattgcgcttgttattttgctaagcttagatat |
17080740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 17081600 - 17081553
Alignment:
| Q |
3 |
tatctttgttgttttaattgcgcttgtgattttgctaagcttagatat |
50 |
Q |
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| T |
17081600 |
tatctttgttgttttaattgggcttgtgattttgctaagcttagatat |
17081553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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