View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_15 (Length: 236)
Name: NF11749_low_15
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 11062688 - 11062467
Alignment:
| Q |
14 |
gttattacctttgattttacccataatttaagtattctttaagttgattcattccatattcctccttaacttagtgagtcttttattgtttcattcaagn |
113 |
Q |
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| T |
11062688 |
gttattacctttgattttacccataatttaagtattctttaagttgattcattccatattcctccttaacttagtgagtcttttattgtttcattcaagt |
11062589 |
T |
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| Q |
114 |
nnnnnnnatgtttattcaagtcttaggagtcttttatactagtaagtgcttggtacttgacaagttgcatcactagttgaaaatttgggtgaatgatata |
213 |
Q |
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| T |
11062588 |
tttttt-atgtttattcaagtcttaggagtcttttatactagtaagtgcttggtacttgacaagttgcatcagtagttgaaaatttgggtgaatgatata |
11062490 |
T |
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| Q |
214 |
gcattgtagtttatgttgtagcc |
236 |
Q |
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| T |
11062489 |
gcattgtagtttatgttgtagcc |
11062467 |
T |
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