View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_3 (Length: 442)
Name: NF11749_low_3
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 203 - 411
Target Start/End: Complemental strand, 41984888 - 41984680
Alignment:
| Q |
203 |
tatctaataaagacatggttccatgagaatataccgcacataatgggtttgaacctttggtttattgaaatgccgtgttgattatgattgtccaatcgat |
302 |
Q |
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| T |
41984888 |
tatctaataaagacatggttccatgataatataccacacataattggtttgaacctttggtttattgaaatgccgtgttgattatgattgtccaatcgat |
41984789 |
T |
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| Q |
303 |
agtgaaatacaaaaacacagcaaaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtatagttaggaatgagaacct |
402 |
Q |
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| T |
41984788 |
agtgaaatacaaaaacacagcaaaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtttagttaggaatgagaacct |
41984689 |
T |
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| Q |
403 |
ggacaactc |
411 |
Q |
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| T |
41984688 |
ggacaactc |
41984680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 41985022 - 41984958
Alignment:
| Q |
126 |
ttgaacctgtgccatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
190 |
Q |
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| T |
41985022 |
ttgaacctgtggcatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
41984958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 41987702 - 41987517
Alignment:
| Q |
16 |
attatcagcaacaaaagacaacatcactgtatgagaaaggaatgaatattttttgtattgaacgacaaaggaagt---------agattctagtaaaccg |
106 |
Q |
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| T |
41987702 |
attatcagcaacagaggacaacatcactgtatgagaaaggaat----attttttgtattgattaacaaaagaagttatatatctagattctagtgaaccg |
41987607 |
T |
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| Q |
107 |
tggctaggtacgagaaatgttgaacctg------tgccatatgagtgaggaaagtacagttacaacttgcaattgacacaacatatgcag |
190 |
Q |
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| T |
41987606 |
tggctagttatgagaaatgttgaacctgggccatagccataggactgaggaaagtgcagttgcaacttgcaattgacacagcttatgcag |
41987517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 41986995 - 41986917
Alignment:
| Q |
325 |
aaaatatatacgttatttatgttttattgcaaattataggaaatatgtgattatatgtatagttaggaatgagaacctg |
403 |
Q |
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| T |
41986995 |
aaaacatatatgttattattgttctattggaaattataggaaatgtgtgattatatgtatggttaggaatgagaacctg |
41986917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 41985075 - 41985017
Alignment:
| Q |
16 |
attatcagcaacaaaagacaacatcactgtatgagaaaggaatgaatattttttgtattgaac |
78 |
Q |
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| T |
41985075 |
attatcagcaacagaagacaacatcactgtatgacaaag----gaatattttttgtattgaac |
41985017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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