View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_4 (Length: 417)
Name: NF11749_low_4
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 41066224 - 41066619
Alignment:
| Q |
1 |
cagatgcatgtttggtacgtgccgccacacgcgcggagattatcagcgatccagtcgtgcatgcgggttgcatggtggatgagaccaggtaaactaccca |
100 |
Q |
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| T |
41066224 |
cagatgcatgtttggtacgtgccgccacacgcgcggagattatcagcgatccagtcgtgcatgcggtttgcatggtggatgagaccaggtaaactaccca |
41066323 |
T |
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| Q |
101 |
ataagggccagacacgtggacctttaagtgaacgtgtgatgaatgaaaaccatattaagtacgccgctatagcggttaagatcattaaagcatttgatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066324 |
ataagggccagacacgtggacctttaagtgaacgtgtgatgaatgaaaaccatattaaatacgccgctatagcggttaagatcattaaagcatttgatgc |
41066423 |
T |
|
| Q |
201 |
atccatgtgctttgtgggacccaataactgaaatacagct---ttattattagttggaagtacttctaatataacaccgtgaaagtttcacggtggaaac |
297 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
41066424 |
atccatgtgctttgtgggacccaataaccgaaatacagctttattattattagttggaagtacttc-----taacacagtgaaagtttcacggtggaaac |
41066518 |
T |
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| Q |
298 |
aacgttaatgtcgtaggttttgatcgacaaacaataattgacgttcaagtttgaatgcatgtacgtaaatttctggttt-aggtgggaggagattggttt |
396 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41066519 |
aaggt---tgtcgtaggttttgatcgacaaacaataattgacgttcaagtttgaatgcatgtacgtaaatttctggtttaaggtgggaggagattggttt |
41066615 |
T |
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