View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_5 (Length: 415)
Name: NF11749_low_5
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 7440085 - 7440459
Alignment:
| Q |
19 |
aaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagcatgaataccagcagtaatcatgaaacaatgcaatatgttaaa |
118 |
Q |
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| T |
7440085 |
aaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagcatgaataccagcagtaatcatgaaacaatgcaatatgtaaaa |
7440184 |
T |
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| Q |
119 |
agcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtagaattccacccaaaaacaaagtagaaccaagttgaacaggatag |
218 |
Q |
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| T |
7440185 |
agcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtagaattccacccaaaaacaaagtagaaccaagttgaacaggatag |
7440284 |
T |
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| Q |
219 |
gctaatgaatcttttttctcatcattcttatttaacaatttaaactaataatcttatagttgtgttttgttcggaactttatccgcgtgctgcaccg--- |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
7440285 |
gctaatgaatcttttttctcatcattct-----------------taataatcttatagttgtgttttgttcggaacttaatccacgtgctgcaccgttt |
7440367 |
T |
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| Q |
316 |
------nnnnnnnnnggtattgtccgtttttggtattaaaacgtgctagagtttagaagagtgtctcgttataaactactcttaatcttcat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7440368 |
ttttttttgttttttggtattgtccgtttttggtattaaaacgtgctagagtttagaagagtgtctcgttataaactactcttaatcttcat |
7440459 |
T |
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