View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11749_low_6 (Length: 356)
Name: NF11749_low_6
Description: NF11749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11749_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 30016767 - 30016895
Alignment:
| Q |
193 |
aggttggattaatccctttttgtttatatcttccttcttacattcttgtgcttcttacatgcatataatatggttttgtaagcactacttttatccacat |
292 |
Q |
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| T |
30016767 |
aggttggattaatccctttttgtttatatcttccttcttacattcttgtgcttcttacatgcatataatatggttttgtaagcactacttttatccacat |
30016866 |
T |
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| Q |
293 |
gttatacaataatattttggggcaccatc |
321 |
Q |
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| T |
30016867 |
gttatacaataatattttggggcaccatc |
30016895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 30016586 - 30016702
Alignment:
| Q |
11 |
cacagacataattaaaaaatgcaaatagttaattatcctccttcatctcctcaacagtaacgtaccctatgacatgcaccatataaattataatacatat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30016586 |
cacacacataattaaaaaatgcaaatagttaattatcctccttcatctcctcaacagtaacgtaccctatgacatgcaccatataaattataatacatat |
30016685 |
T |
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| Q |
111 |
tattttattctaatagga |
128 |
Q |
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| T |
30016686 |
ta-tttattctaatagga |
30016702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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