View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_high_2 (Length: 402)
Name: NF1174_high_2
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_high_2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 37 - 390
Target Start/End: Complemental strand, 3310900 - 3310547
Alignment:
| Q |
37 |
ttttaatgaatttatgttaaatttgtgctctagttgctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcctaaattcgtgat |
136 |
Q |
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|||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
3310900 |
ttttaatgaatttatgttaaatttatgctctaattgctgttttgattttaggtatattattgtcgtttgaatcattatttttacgtcctaaattcgtgat |
3310801 |
T |
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| Q |
137 |
ttaatcgtggttacgttgtttattttgttataaaagtcaccgtgtttttcaagcagtacgacattgttttttattatgcttgtgaaattgaatattgatt |
236 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
3310800 |
ttaattgtggttacgttgtttattttgttataaaagtcaacgtgtttttcaagcagtacgacattgtttttgattatgcttgtgaaattgaattttgatt |
3310701 |
T |
|
| Q |
237 |
caatcgatgttgttatcccttttgaaagaaacatgtagctatttatactgtgattgtcatatgggttttgcaagtgtttgtataattaattttataagaa |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3310700 |
caatcgatgttgttatcccttttgaaagaaacatgtagctatttatactgtgattgtcatatgggttttgcaagtgtttgtataattaattttataagaa |
3310601 |
T |
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| Q |
337 |
ccatgaattatgttgttccatgaatatttggttaatggctattcttgtgagtat |
390 |
Q |
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| T |
3310600 |
ccatgaattatgctgttccatgaatatttggttaatggctattcttgtgagtat |
3310547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 3312586 - 3312357
Alignment:
| Q |
37 |
ttttaatgaatttatgttaaatttgtgctctagttgctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcctaaattcgtgat |
136 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3312586 |
ttttaatgaatttatgttatatttgtgctctaattgctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcttaaattcgtgat |
3312487 |
T |
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| Q |
137 |
ttaatcgtggttacgttgtttattttgttataaaagtcaccgtgtttttcaagcagtacgacattgttttttattatgcttgtgaaattgaatattgatt |
236 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
3312486 |
ttagttgtggttacgttgtttattttgttataaaagtcaccgtgtttttcaagcagtacgacattgtttttgattatgcttgtgaaattgaattttgatt |
3312387 |
T |
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| Q |
237 |
caatcgatgttgttatcccttttgaaagaa |
266 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
3312386 |
caattgatgttgttatcccttttgaaagaa |
3312357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 20180886 - 20180784
Alignment:
| Q |
36 |
tttttaatgaatttatgttaaatttgtgctctagttg-ctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcctaaattcgtg |
134 |
Q |
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||||||||||||| |||||||||| ||| |||| || ||| | ||||||| ||||| || ||||| |||| ||||||||||||| || |||||||| || |
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| T |
20180886 |
tttttaatgaattcatgttaaattcgtgatctacttttctgttgtgattttgggtattttcttgtctttgagttcattatttttatgtgctaaattcatg |
20180787 |
T |
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| Q |
135 |
att |
137 |
Q |
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||| |
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| T |
20180786 |
att |
20180784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 171590 - 171689
Alignment:
| Q |
34 |
attttttaatgaatttatgttaaatttgtgctctagttgctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcctaaattcgt |
133 |
Q |
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||||| ||||||||||||||||||| ||||| | || ||| | ||||||| ||||||| || || |||||||||||||||| | || |||||||||| |
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| T |
171590 |
attttataatgaatttatgttaaatccgtgcttgatttactgttgtgattttgtgtatattcttttctttgaattcattattttcatgtgctaaattcgt |
171689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 14645701 - 14645602
Alignment:
| Q |
34 |
attttttaatgaatttatgttaaatttgtgctctagttgctgctttgattttaggtatattattgtcgttgaattcattatttttaggtcctaaattcgt |
133 |
Q |
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||||| ||||||||||||||||||| ||||| | || ||| | ||||||| ||||||| || || |||||||||||||||| | || |||||||||| |
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| T |
14645701 |
attttataatgaatttatgttaaatccgtgcttgatttactgttgtgattttgtgtatattcttttctttgaattcattattttcatgtgctaaattcgt |
14645602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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