View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_high_3 (Length: 396)
Name: NF1174_high_3
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 391
Target Start/End: Complemental strand, 8122598 - 8122235
Alignment:
| Q |
29 |
tatagttttaaatattttcaaagctcctcgatttataaatcaactatctttccttttcaatggtggaatcttacatatcaatgtgaattcaatattannn |
128 |
Q |
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| T |
8122598 |
tatagttttaaatattttcaaagctcctcgatttataaatcaactatctttccttttcaatggtggaatcttacatgtcaatgtgaattcaatattattt |
8122499 |
T |
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| Q |
129 |
nnnnaagtgtactctttaagtgtactctctcacaaataattgaaatataagcatagtaaatatc-ataaattgtcatccaaaggaaccattcttattctt |
227 |
Q |
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| T |
8122498 |
ttttaagagtactcttttagtgtactctctcacaaataattgaaatataagcatagtaaatatttataaattgtcatctaaaccaaccattcttattctt |
8122399 |
T |
|
| Q |
228 |
tcaagccattcttttcaattctcgttacaattttattttagtttatgagtgagtatctttttacactcaacatgaaagaggaagtacttttatgctgtta |
327 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8122398 |
tcaagccattctttacaattctcgttacaatttcattttagtttatgagtgagtatctttttacactcaacatgaaagaggaagtacttttatgctgtta |
8122299 |
T |
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| Q |
328 |
atacgtttgtatgtggggatttttatttttccttgtaatattgtatgcgggtcttcatctcact |
391 |
Q |
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| T |
8122298 |
atacgtttgtatgtggggatttttatttttccttgtaatattgtatgcgggtcttaatctcact |
8122235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 12880084 - 12880120
Alignment:
| Q |
155 |
ctctcacaaataattgaaatataagcatagtaaatat |
191 |
Q |
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||||||||| |||||||||||||||||||||| |||| |
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| T |
12880084 |
ctctcacaagtaattgaaatataagcatagtagatat |
12880120 |
T |
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