View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1174_high_4 (Length: 376)

Name: NF1174_high_4
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1174_high_4
NF1174_high_4
[»] chr1 (9 HSPs)
chr1 (30-306)||(8016214-8016493)
chr1 (187-244)||(46252676-46252733)
chr1 (209-246)||(1565551-1565588)
chr1 (187-224)||(3223706-3223743)
chr1 (189-242)||(5886990-5887043)
chr1 (297-326)||(8016160-8016189)
chr1 (187-244)||(10809364-10809421)
chr1 (198-255)||(38503470-38503527)
chr1 (190-226)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (187-244)||(3528822-3528879)
chr6 (187-236)||(281842-281891)
chr6 (183-224)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (187-243)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (190-244)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (198-244)||(35379021-35379067)
chr2 (190-244)||(44443340-44443394)
chr2 (187-244)||(43199778-43199835)
chr2 (184-244)||(43910990-43911050)
[»] chr8 (1 HSPs)
chr8 (187-244)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (121-154)||(1288764-1288797)
chr3 (192-244)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (125-157)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 8016493 - 8016214
Alignment:
Q  30 acaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagttgctatacctcatgatctaatgtttgctacatccgaggttagtttgttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8016493 acaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagttgctatacctcatgatctaatgtttgctacgtccgaggttagtttgttt 8016394  T
Q  130 tgattgacttatttgagcttatca---attgtctcgaatatttatgagactggccaggagaacttatgaaatgtttataacttgttttcagcttattttc 226  Q
    ||||||||||||||||| ||||||   ||||||| ||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||    
T  8016393 tgattgacttatttgagattatcatcaattgtcttgaatatttatgagactgtccgggagaacttatgacatgttcataacttgttttcagcttattttc 8016294  T
Q  227 ctgagctctccaagatagataacagaaactcatatgaaaacaataactccattttattttttgttatagaaaaatggctt 306  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016293 ctaagctctccaagatagataacagaaactcatatgaaaacaataactccattttattttttgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 46252676 - 46252733
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    ||||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  209 tgttttcagcttattttcctgagctctccaagatagat 246  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 3223743 - 3223706
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattt 224  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  3223743 aacttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  189 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 242  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  297 aaaatggctttgcatgttaaagctttgatg 326  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 10809421 - 10809364
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    ||||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809421 aacttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  198 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 255  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  190 ttatgaaatgtttataacttgttttcagcttattttc 226  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 3528879 - 3528822
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    ||||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528879 aacttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 281842 - 281891
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctc 236  Q
    ||||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 6537027 - 6536986
Alignment:
Q  183 ggagaacttatgaaatgtttataacttgttttcagcttattt 224  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  6537027 ggagaacttatgacatgttcataagttgttttcagcttattt 6536986  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 25670580 - 25670636
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 243  Q
    ||||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670580 aacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  190 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  198 tgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  190 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 43199778 - 43199835
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199778 aacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 43910990 - 43911050
Alignment:
Q  184 gagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||   |||| ||||||||||    
T  43910990 gagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatag 43911050  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 7714318 - 7714261
Alignment:
Q  187 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    ||||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714318 aacttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 1288764 - 1288797
Alignment:
Q  121 agtttgttttgattgacttatttgagcttatcaa 154  Q
    ||||||||| ||||||||||||||||||||||||    
T  1288764 agtttgtttggattgacttatttgagcttatcaa 1288797  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  192 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 244  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 38336816 - 38336848
Alignment:
Q  125 tgttttgattgacttatttgagcttatcaattg 157  Q
    |||||||||||||||||||||||||||| ||||    
T  38336816 tgttttgattgacttatttgagcttatccattg 38336848  T

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