View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_high_7 (Length: 298)
Name: NF1174_high_7
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_high_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 8124433 - 8124168
Alignment:
| Q |
30 |
gatctctaagtcattgtatatatacttacttgtaactcacttttcataatccaatgtaaataacaactttcaaaactactattctctctctttcatcaat |
129 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
8124433 |
gatctctaagttattgtatatatacttacttgtaactcacttttcataatccaatgtgaataacaactttcaaaacta---ttctctctctttcatcaat |
8124337 |
T |
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| Q |
130 |
ccataacaacctctaaccgccgtaaccaacttcatcttctccattagaaaccctaaccctaatttcacagtgttgcttgcacatgagaaaaccataagct |
229 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8124336 |
ccataacaacctctaaccaccataaccaacttcatcttctccattagaaaccttaaccctaatttcacagtgttgcttgcgcatgagaaaaccataagct |
8124237 |
T |
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| Q |
230 |
gcgctaaaaaatccaaccctcatggtgccttaatgtgcctcaacttcgtaaatatgcccatgacccttc |
298 |
Q |
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| T |
8124236 |
gcgctaataaatccaaccctcatggtgccttaatgtgcctcaacttcgtaaatatgcccatgacccttc |
8124168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 32366738 - 32366580
Alignment:
| Q |
32 |
tctctaagtcattgtatatatacttacttgtaactcacttttcataatccaatgtaaataacaactttcaaaacta----ctat-tctctctctttcatc |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || | ||||||||| ||||| |
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| T |
32366738 |
tctctaagtcattgtatatatacttacttgtaactcacttttcataatccaatgtgaataacaactttcaatactattccctctctctctctctctcatc |
32366639 |
T |
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| Q |
127 |
aatccataacaacctctaaccgccgtaaccaacttcatcttctccattagaaaccctaa |
185 |
Q |
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|||| ||||||| | |||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
32366638 |
aatctataacaaaccctaaccaccataaccaacttcatcttcttcattagaaaccctaa |
32366580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 32372443 - 32372289
Alignment:
| Q |
32 |
tctctaagtcattgtatatatacttacttgtaactcacttttcataatccaatgtaaataacaactttcaaaactactat-tctctctctttcatcaatc |
130 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||| | | ||||||||| ||||||||| |
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| T |
32372443 |
tctctaagtcattgtatatatacttacctgtaactcatttttcataatccaatgtgaataacaactttcaatgctattctctctctctctctcatcaatc |
32372344 |
T |
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| Q |
131 |
cataacaacctctaaccgccgtaaccaacttcatcttctccattagaaaccctaa |
185 |
Q |
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||||||| | |||||| || ||||||||||||||| || ||||||||||||||| |
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| T |
32372343 |
tataacaaaccctaaccaccataaccaacttcatctccttcattagaaaccctaa |
32372289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 35276753 - 35276629
Alignment:
| Q |
112 |
tctctctctttcatcaatccataacaacctctaaccgccgtaaccaacttcatcttctccattagaaaccctaaccctaatttcacagtgttgcttgcac |
211 |
Q |
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||||||||| ||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
35276753 |
tctctctctctcatcaatctataacaatctctaaccaccataaccaacttcatcttctccattagaaaccctaaccctaatttcttagttttgcttgcac |
35276654 |
T |
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| Q |
212 |
atgagaaaaccataagctgcgctaa |
236 |
Q |
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| | ||||||||||||||||||| |
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| T |
35276653 |
aataagaaaccataagctgcgctaa |
35276629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 3952607 - 3952456
Alignment:
| Q |
32 |
tctctaagtcattgtatatatacttacttgtaactcacttttcataatccaatgtaaataacaactttcaaaactactat-tctctctctttcatcaatc |
130 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| || |||||| ||||||||||||||||| | |
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| T |
3952607 |
tctctaagtcattgtatatatacttgcttgtaactaacttttcataatccaacatgaataacaactttccaa--tactatctctctctctttcatcaaac |
3952510 |
T |
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| Q |
131 |
cataacaacctctaaccgccgtaaccaacttcatcttctccattagaaacccta |
184 |
Q |
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||||||| | ||||||||| |||| | |||| ||| || |||||||||||||| |
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| T |
3952509 |
tataacaaaccctaaccgccataactatcttcttctccttcattagaaacccta |
3952456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 10190971 - 10191125
Alignment:
| Q |
32 |
tctctaagtcattgtatata--tacttacttgtaactcacttttcataatccaatgtaaataacaactttcaaaactactattctctctctttcatcaat |
129 |
Q |
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||||||||||||||| |||| ||| || |||||||||| ||| || |||| |||| ||||||||||||| || | | ||||||||||||||| || |
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| T |
10190971 |
tctctaagtcattgtgtataaatacataattgtaactcaattt-caaaatctaatgagaataacaactttccaatattatcttctctctctttcataaac |
10191069 |
T |
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| Q |
130 |
ccataacaacctctaaccgccgtaaccaacttcatcttctccattagaaaccctaa |
185 |
Q |
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| |||||||||||||||| || |||||||||||||||||||| || |||||||||| |
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| T |
10191070 |
ctataacaacctctaaccaccataaccaacttcatcttctccgttggaaaccctaa |
10191125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 17372050 - 17371933
Alignment:
| Q |
32 |
tctctaagtcattgtata--tatacttacttgtaactcacttttcataatccaat-gtaaataacaactttcaaaactactat-tctctctctttcatca |
127 |
Q |
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|||||||||||||||||| |||| || ||||||||||||||||||||||||||| || ||||||||||||| || | |||| ||||||| |||||||| |
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| T |
17372050 |
tctctaagtcattgtataaatatatttgcttgtaactcacttttcataatccaatagtgaataacaactttccaa--ttctatctctctctttttcatca |
17371953 |
T |
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| Q |
128 |
atccataacaacctctaacc |
147 |
Q |
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| | ||||||| | |||||| |
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| T |
17371952 |
aactataacaaaccctaacc |
17371933 |
T |
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