View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_high_8 (Length: 290)
Name: NF1174_high_8
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5522895 - 5522615
Alignment:
| Q |
1 |
tctttcggattctccacgagttcaaaattatcgaccacatcaaggtgactctcaaaagctttaaaggaaatcatttttcctttcctaattggtttgtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522895 |
tctttcggattctccacgagttcaaaattatcgaccacatcaaggtgactctcaaaagctttaaaggaaatcatttttcctttcctaattggtttgtctt |
5522796 |
T |
|
| Q |
101 |
cactgagtagaacttcatgagtggtaatcctatcaacattttctattacaaggtttcaatttttagcatggtgattgaaatcatacctttctccatcatt |
200 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522795 |
cactgagtagaacttcatgagttgtaatcctatgaacattttctattacaaggtttcaatttttagcatggtgattgaaatcatacctttctccatcatt |
5522696 |
T |
|
| Q |
201 |
ggtttctcctgagtttcactgagtacttttaatggaagatcttcatctttctccggttgtttctttctatgatcttcatct |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522695 |
ggtttctcctgagtttcactgagtacttttaatggaagatcttcatctttctccggttgtttctttctatgatcttcatct |
5522615 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 18834155 - 18834207
Alignment:
| Q |
69 |
aatcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgag |
121 |
Q |
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|||||| || |||||| | ||||||||||||||| |||| ||||||||||||| |
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| T |
18834155 |
aatcatcttgcctttcatgattggtttgtcttcaatgagcagaacttcatgag |
18834207 |
T |
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