View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_high_9 (Length: 280)
Name: NF1174_high_9
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 22353822 - 22353682
Alignment:
| Q |
28 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
22353822 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctg |
22353723 |
T |
|
| Q |
128 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22353722 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
22353682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 22353606 - 22353567
Alignment:
| Q |
232 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22353606 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
22353567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 26071921 - 26072061
Alignment:
| Q |
28 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
26071921 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctg |
26072020 |
T |
|
| Q |
128 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072021 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
26072061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 26072137 - 26072176
Alignment:
| Q |
232 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26072137 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
26072176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 1671781 - 1671641
Alignment:
| Q |
28 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
1671781 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctg |
1671682 |
T |
|
| Q |
128 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
168 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1671681 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
1671641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 44270709 - 44270849
Alignment:
| Q |
28 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
44270709 |
catcaacaacaggaacaccaatcacacaagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctg |
44270808 |
T |
|
| Q |
128 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44270809 |
caaactcctcgagaccattcaaatatgacatttctaatgac |
44270849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 1671565 - 1671526
Alignment:
| Q |
232 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1671565 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
1671526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 44270925 - 44270964
Alignment:
| Q |
232 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
44270925 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
44270964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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