View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1174_low_16 (Length: 297)
Name: NF1174_low_16
Description: NF1174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1174_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 47057166 - 47057281
Alignment:
| Q |
84 |
caaaggtttctttcctgttctcgttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagccatttgggttt |
183 |
Q |
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| T |
47057166 |
caaaggtttctttcctgttctcgttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagccatttaggttt |
47057265 |
T |
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| Q |
184 |
ccgaaaagaatcaaac |
199 |
Q |
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| T |
47057266 |
ccgaaaagaatcaaac |
47057281 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 26970298 - 26970383
Alignment:
| Q |
84 |
caaaggtttctttcctgttctcgttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaata |
170 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||| |||||||||||| ||||| |||||||| |
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| T |
26970298 |
caaaggtttctttcc-gttctcgttctcattgatgcgtccccatttattttcttaccttatatatttcttgagctcaacgttaaata |
26970383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 26920711 - 26920796
Alignment:
| Q |
98 |
ctgttctcgttctcattgccgcgtccccatttattttccttccttttatatttcttgatctcaatgttaaatagcca-tttgggtt |
182 |
Q |
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|||||||||||||||||| ||||||||||||||||| | | |||| |||||||||||| ||||| |||||||| ||| |||||||| |
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| T |
26920711 |
ctgttctcgttctcattgacgcgtccccatttatttgcttaccttatatatttcttgagctcaacgttaaatacccactttgggtt |
26920796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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